Improved genome assembly of Chinese shrimp ( Fenneropenaeus chinensis ) suggests adaptation to the environment during evolution and domestication

A chromosome‐level assembly of the black tiger shrimp ( Penaeus monodon ) genome facilitates the identification of growth‐associated genes

(2021) Tanaporn Uengwetwanit et al.   Molecular Ecology Resources

Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp

(2021) Jianbo Yuan et al.   Communications Biology

Genome survey and high-resolution genetic map provide valuable genetic resources for Fenneropenaeus chinensis

(2021) Xianhong Meng et al.   Scientific Reports

Improved genomic resources for the black tiger prawn (Penaeus monodon)

(2020) Dong Van Quyen et al.   Marine Genomics

High temperature-induced plant disease susceptibility: more than the sum of its parts

(2020) Stephen P Cohen et al.   CURRENT OPINION IN PLANT BIOLOGY

Research advances in the genomics and applications for molecular breeding of aquaculture animals

(2020) Xinxin You et al.   AQUACULTURE

Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

(2019) Xiaojun Zhang et al.   Nature Communications

Interaction of the small GTP-binding protein (Rab7) with β-actin in Litopenaeus vannamei and its role in white spot syndrome virus infection

(2019) Jixing Feng et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative proteomic investigation of Marsupenaeus japonicus hepatopancreas challenged with Vibrio parahaemolyticus and white spot syndrome virus

(2019) Xianyun Ren et al.   FISH & SHELLFISH IMMUNOLOGY

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

The Third Revolution in Sequencing Technology

(2018) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Changes in Nutritional Status Impact Immune Cell Metabolism and Function

(2018) Yazan Alwarawrah et al.   Frontiers in Immunology

The effect of temperature on white spot disease progression in a crustacean, Pacifastacus leniusculus

(2018) Gül Gizem Korkut et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Evaluation of genetic parameters for growth and cold tolerance traits in Fenneropenaeus chinensis juveniles

(2017) Mingzhu Wang et al.   PLoS One

Immunometabolism: Cellular Metabolism Turns Immune Regulator

(2015) Róisín M. Loftus et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific White Shrimp Litopenaeus vannamei

(2015) Yang Yu et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

(2014) M. Carneiro et al.   SCIENCE

Viral exploitation of actin: force-generation and scaffolding functions in viral infection

(2014) Mark Spear et al.   VIROLOGICA SINICA

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Actin in Herpesvirus Infection

(2011) Kari L. Roberts et al.   Viruses-Basel

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Palaeogenomics of pterosaurs and the evolution of small genome size in flying vertebrates

(2008) C. L Organ et al.   Biology Letters

Genome size and wing parameters in passerine birds

(2008) C. B Andrews et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE