Development of a growth coupled and multi-layered dynamic regulation network balancing malonyl-CoA node to enhance (2S)-naringenin biosynthesis in Escherichia coli

Quorum Sensing System Used as a Tool in Metabolic Engineering

(2020) Chang Ge et al.   Biotechnology Journal

Engineering intracellular malonyl-CoA availability in microbial hosts and its impact on polyketide and fatty acid synthesis

(2020) Lars Milke et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Promoter library based pathway optimization for efficient (2S)-naringenin production from p-coumaric acid in Saccharomyces cerevisiae

(2020) Song Gao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Developing an endogenous quorum-sensing based CRISPRi circuit for autonomous and tunable dynamic regulation of multiple targets in Streptomyces

(2020) Jinzhong Tian et al.   NUCLEIC ACIDS RESEARCH

Fermentation and metabolic pathway optimization to de novo synthesize (2S)-naringenin in Escherichia coli

(2020) Shenghu Zhou et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Selene: a PyTorch-based deep learning library for sequence data

(2019) Kathleen M. Chen et al.   NATURE METHODS

Fatty acid biosynthesis: Chain length regulation and control

(2019) Martin Grininger et al.   CHEMBIOCHEM

Fine‐tuning the (2 S )‐naringenin synthetic pathway using an iterative high‐throughput balancing strategy

(2019) Shenghu Zhou et al.   BIOTECHNOLOGY AND BIOENGINEERING

Light-based control of metabolic flux through assembly of synthetic organelles

(2019) Evan M. Zhao et al.   Nature Chemical Biology

Dynamic gene expression engineering as a tool in pathway engineering

(2019) Xiaolin Shen et al.   CURRENT OPINION IN BIOTECHNOLOGY

A tight cold-inducible switch built by coupling thermosensitive transcriptional and proteolytic regulatory parts

(2019) Yang Zheng et al.   NUCLEIC ACIDS RESEARCH

Engineering 4-coumaroyl-CoA derived polyketide production in Yarrowia lipolytica through a β-oxidation mediated strategy

(2019) Claire M. Palmer et al.   METABOLIC ENGINEERING

Development of an autonomous and bifunctional quorum-sensing circuit for metabolic flux control in engineeredEscherichia coli

(2019) Christina V. Dinh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein Acylation Affects the Artificial Biosynthetic Pathway for Pinosylvin Production in Engineered E. coli

(2018) Jun-Yu Xu et al.   ACS Chemical Biology

Deep learning to predict the lab-of-origin of engineered DNA

(2018) Alec A. K. Nielsen et al.   Nature Communications

Dynamic control of endogenous metabolism with combinatorial logic circuits

(2018) Felix Moser et al.   Molecular Systems Biology

A NodD-like protein activates transcription of genes involved with naringenin degradation in a flavonoid-dependent manner in Herbaspirillum seropedicae

(2017) R. Wassem et al.   ENVIRONMENTAL MICROBIOLOGY

Development of Artificial Riboswitches for Monitoring of Naringenin In Vivo

(2017) Sungho Jang et al.   ACS Synthetic Biology

Obtaining a Panel of Cascade Promoter-5′-UTR Complexes in Escherichia coli

(2017) Shenghu Zhou et al.   ACS Synthetic Biology

Development of a Bacterial Biosensor for Rapid Screening of Yeast p-Coumaric Acid Production

(2017) Solvej Siedler et al.   ACS Synthetic Biology

Strategies for Fermentation Medium Optimization: An In-Depth Review

(2017) Vineeta Singh et al.   Frontiers in Microbiology

Microbial production of natural and non-natural flavonoids: Pathway engineering, directed evolution and systems/synthetic biology

(2016) Ramesh Prasad Pandey et al.   BIOTECHNOLOGY ADVANCES

Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis

(2016) Yi Xiao et al.   Nature Chemical Biology

Coenzyme A: to make it or uptake it?

(2016) Ody C.M. Sibon et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genetically encoded sensors enable real-time observation of metabolite production

(2016) Jameson K. Rogers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae

(2016) Florian David et al.   ACS Synthetic Biology

Regulating malonyl-CoA metabolism via synthetic antisense RNAs for enhanced biosynthesis of natural products

(2015) Yaping Yang et al.   METABOLIC ENGINEERING

Synthetic biosensors for precise gene control and real-time monitoring of metabolites

(2015) Jameson K. Rogers et al.   NUCLEIC ACIDS RESEARCH

Efficient Synthesis of Eriodictyol from l-Tyrosine in Escherichia coli

(2014) Saijie Zhu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fine-Tuning of the Fatty Acid Pathway by Synthetic Antisense RNA for Enhanced (2S)-Naringenin Production from l-Tyrosine in Escherichia coli

(2014) Junjun Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improving fatty acids production by engineering dynamic pathway regulation and metabolic control

(2014) P. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monitoring bacterial growth using tunable resistive pulse sensing with a pore-based technique

(2013) Allen C. S. Yu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

(2013) F. Ann Ran et al.   CELL

Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli

(2013) Solvej Siedler et al.   METABOLIC ENGINEERING

RND type efflux pump system MexAB-OprM of pseudomonas aeruginosa selects bacterial languages, 3-oxo-acyl-homoserine lactones, for cell-to-cell communication

(2012) Shu Minagawa et al.   BMC MICROBIOLOGY

Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy

(2012) Junjun Wu et al.   METABOLIC ENGINEERING

ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli

(2012) Peng Xu et al.   ACS Synthetic Biology

p-Coumaric acid kills bacteria through dual damage mechanisms

(2011) Zaixiang Lou et al.   FOOD CONTROL

Genetic and Biochemical Analysis of PadR-padC Promoter Interactions during the Phenolic Acid Stress Response in Bacillus subtilis 168

(2011) T. K. C. Nguyen et al.   JOURNAL OF BACTERIOLOGY

Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA

(2011) Peng Xu et al.   METABOLIC ENGINEERING

A ketosynthase homolog uses malonyl units to form esters in cervimycin biosynthesis

(2011) Tom Bretschneider et al.   Nature Chemical Biology

Current understanding of fatty acid biosynthesis and the acyl carrier protein

(2010) David I. Chan et al.   BIOCHEMICAL JOURNAL

Improving cellular malonyl-CoA level in Escherichia coli via metabolic engineering

(2009) Wenjuan Zha et al.   METABOLIC ENGINEERING

Phenolic Acid-Mediated Regulation of the padC Gene, Encoding the Phenolic Acid Decarboxylase of Bacillus subtilis

(2008) N. P. Tran et al.   JOURNAL OF BACTERIOLOGY