Nanopore sequencing reveals full‐length Tropomyosin 1 isoforms and their regulation by RNA‐binding proteins during rat heart development

Structural and Functional Peculiarities of Cytoplasmic Tropomyosin Isoforms, the Products of TPM1 and TPM4 Genes

(2021) Marina Marchenko et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

(2020) Chaitali Misra et al.   DEVELOPMENTAL CELL

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm

(2020) Luotong Wang et al.   Frontiers in Genetics

Neural crest-specific deletion of Rbfox2 in mice leads to craniofacial abnormalities including cleft palate

(2019) Dasan Mary Cibi et al.   eLife

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Rbfox Splicing Factors Maintain Skeletal Muscle Mass by Regulating Calpain3 and Proteostasis

(2018) Ravi K. Singh et al.   Cell Reports

Tropomyosin 1: Multiple roles in the developing heart and in the formation of congenital heart defects

(2017) Jennifer England et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Developmentally regulated alternative splicing is perturbed in type 1 diabetic skeletal muscle

(2017) Curtis A. Nutter et al.   MUSCLE & NERVE

Alternative splicing as a regulator of development and tissue identity

(2017) Francisco E. Baralle et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Encyclopedia of DNA elements (ENCODE): data portal update

(2017) Carrie A Davis et al.   NUCLEIC ACIDS RESEARCH

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

Loss of RNA expression and allele-specific expression associated with congenital heart disease

(2016) David M. McKean et al.   Nature Communications

Rbfox2 function in RNA metabolism is impaired in hypoplastic left heart syndrome patient hearts

(2016) Sunil K. Verma et al.   Scientific Reports

Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes

(2016) Curtis A. Nutter et al.   Cell Reports

Cardiac Troponin and Tropomyosin: Structural and Cellular Perspectives to Unveil the Hypertrophic Cardiomyopathy Phenotype

(2016) Mayra de A. Marques et al.   Frontiers in Physiology

Oxford Nanopore MinION Sequencing and Genome Assembly

(2016) Hengyun Lu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations

(2016) Spyros Oikonomopoulos et al.   Scientific Reports

Sarcomeric protein isoform transitions in cardiac muscle: A journey to heart failure

(2015) Zhiyong Yin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Tropomyosin - master regulator of actin filament function in the cytoskeleton

(2015) P. W. Gunning et al.   JOURNAL OF CELL SCIENCE

De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies

(2015) J. Homsy et al.   SCIENCE

Repression of the Central Splicing Regulator RBFox2 Is Functionally Linked to Pressure Overload-Induced Heart Failure

(2015) Chaoliang Wei et al.   Cell Reports

Translational Control of Tropomyosin Expression in Vertebrate Hearts

(2014) Dipak K. Dube et al.   Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology

Rbfox2 controls autoregulation in RNA-binding protein networks

(2014) M. Jangi et al.   GENES & DEVELOPMENT

A systematic nomenclature for mammalian tropomyosin isoforms

(2014) Michael A. Geeves et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

Rbfox2-Coordinated Alternative Splicing of Mef2d and Rock2 Controls Myoblast Fusion during Myogenesis

(2014) Ravi K. Singh et al.   MOLECULAR CELL

Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation

(2013) S. Sebastian et al.   GENES & DEVELOPMENT

Reactivation of Fetal Splicing Programs in Diabetic Hearts Is Mediated by Protein Kinase C Signaling

(2013) Sunil K. Verma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A study of tropomyosin’s role in cardiac function and disease using thin-filament reconstituted myocardium

(2013) Fan Bai et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

Alpha-tropomyosin mutations in inherited cardiomyopathies

(2013) Charles Redwood et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

(2013) Michael T Lovci et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3

(2013) Clare Gooding et al.   NUCLEIC ACIDS RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions

(2011) Thomas L. Gallagher et al.   DEVELOPMENTAL BIOLOGY

Structural Analysis of Smooth Muscle Tropomyosin α and β Isoforms

(2011) Jampani Nageswara Rao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expression of tropomyosin-κ induces dilated cardiomyopathy and depresses cardiac myofilament tension by mechanisms involving cross-bridge dependent activation and altered tropomyosin phosphorylation

(2011) Chehade N. Karam et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

RBFOX2 Promotes Protein 4.1R Exon 16 Selection via U1 snRNP Recruitment

(2011) S.-C. Huang et al.   MOLECULAR AND CELLULAR BIOLOGY

Mechanisms of activation and repression by the alternative splicing factors RBFOX1/2

(2011) S. Sun et al.   RNA

Molecular and Functional Characterization of a Novel Cardiac-Specific Human Tropomyosin Isoform

(2010) Sudarsan Rajan et al.   CIRCULATION

Expression of a novel tropomyosin isoform in axolotl heart and skeletal muscle

(2010) Anish Thomas et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Striated muscle tropomyosin isoforms differentially regulate cardiac performance and myofilament calcium sensitivity

(2010) Ganapathy Jagatheesan et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB

(2010) Miriam Llorian et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping

(2009) Yuanchao Xue et al.   MOLECULAR CELL

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

(2009) Gene W Yeo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Tropomyosin-Based Regulation of the Actin Cytoskeleton in Time and Space

(2008) Peter Gunning et al.   PHYSIOLOGICAL REVIEWS

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

(2008) A. Kalsotra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA