Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture

Modulation of plant root growth by nitrogen source‐defined regulation of polar auxin transport

(2021) Krisztina Ötvös et al.   EMBO JOURNAL

Primary nitrate responses mediated by calcium signalling and diverse protein phosphorylation

(2020) Kun-Hsiang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

(2020) José M. Alvarez et al.   Nature Communications

The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate

(2020) Amel Maghiaoui et al.   JOURNAL OF EXPERIMENTAL BOTANY

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(2019) Huaiyu Mi et al.   Nature Protocols

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

(2019) Matthew D. Brooks et al.   Nature Communications

Phosphorylation-Mediated Dynamics of Nitrate Transceptor NRT1.1 Regulate Auxin Flux and Nitrate Signaling in Lateral Root Growth

(2019) Xi Zhang et al.   PLANT PHYSIOLOGY

Nitrate and hormonal signaling crosstalk for plant growth and development

(2019) Andrea Vega et al.   CURRENT OPINION IN PLANT BIOLOGY

GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis

(2018) Michitaro Shibata et al.   DEVELOPMENT

Proteome-wide identification of ubiquitin interactions using UbIA-MS

(2018) Xiaofei Zhang et al.   Nature Protocols

Responses to Systemic Nitrogen Signaling in Arabidopsis Roots Involvetrans-Zeatin in Shoots

(2018) Arthur Poitout et al.   PLANT CELL

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

(2018) Kranthi Varala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation and Polarity Control of PIN-FORMED Auxin Transporters by Phosphorylation

(2018) Inês C.R. Barbosa et al.   TRENDS IN PLANT SCIENCE

Transcriptional regulation of nitrogen-associated metabolism and growth

(2018) Allison Gaudinier et al.   NATURE

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(2018) Rose Oughtred et al.   NUCLEIC ACIDS RESEARCH

SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana

(2017) Diana E Gras et al.   JOURNAL OF EXPERIMENTAL BOTANY

Discovery of nitrate–CPK–NLP signalling in central nutrient–growth networks

(2017) Kun-hsiang Liu et al.   NATURE

Mapping genome-wide transcription-factor binding sites using DAP-seq

(2017) Anna Bartlett et al.   Nature Protocols

Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana

(2017) Javier Canales et al.   PLANT JOURNAL

Dynamic PIN-FORMED auxin efflux carrier phosphorylation at the plasma membrane controls auxin efflux-dependent growth

(2017) Benjamin Weller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Highly Efficient Single-Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations

(2017) Xu Na Wu et al.   Frontiers in Plant Science

Shoot-to-Root Mobile Transcription Factor HY5 Coordinates Plant Carbon and Nitrogen Acquisition

(2016) Xiangbin Chen et al.   CURRENT BIOLOGY

Long-distance nitrate signaling displays cytokinin dependent and independent branches

(2016) Sandrine Ruffel et al.   Journal of Integrative Plant Biology

Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves

(2016) Lam Dai Vu et al.   JOURNAL OF PROTEOME RESEARCH

Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies

(2016) Cosmin Lazar et al.   JOURNAL OF PROTEOME RESEARCH

Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition

(2016) Jochen Menz et al.   PLANT JOURNAL

Hormones and nitrate: a two-way connection

(2016) Gabriel Krouk   PLANT MOLECULAR BIOLOGY

Integration of omic networks in a developmental atlas of maize

(2016) J. W. Walley et al.   SCIENCE

Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis

(2015) Li-Ling Lin et al.   BMC GENOMICS

Arabidopsis response to low-phosphate conditions includes active changes in actin filaments and PIN2 polarization and is dependent on strigolactone signalling

(2015) Manoj Kumar et al.   JOURNAL OF EXPERIMENTAL BOTANY

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(2015) Wolfgang Huber et al.   NATURE METHODS

The Calcium Ion Is a Second Messenger in the Nitrate Signaling Pathway of Arabidopsis

(2015) Eleodoro Riveras et al.   PLANT PHYSIOLOGY

Nitrate sensing and uptake inArabidopsisare enhanced by ABI2, a phosphatase inactivated by the stress hormone abscisic acid

(2015) Sophie Léran et al.   Science Signaling

Adaptive Posttranslational Control in Cellular Stress Response Pathways and Its Relationship to Toxicity Testing and Safety Assessment

(2015) Qiang Zhang et al.   TOXICOLOGICAL SCIENCES

Nitrate sensing and uptake inArabidopsisare enhanced by ABI2, a phosphatase inactivated by the stress hormone abscisic acid

(2015) Sophie Léran et al.   Science Signaling

Multiple mechanisms of nitrate sensing by Arabidopsis nitrate transceptor NRT1.1

(2015) E. Bouguyon et al.   Nature Plants

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(2014) Monika Zulawski et al.   BMC GENOMICS

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(2014) Matthew T. Weirauch et al.   CELL

Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.)

(2014) Ming Zhang et al.   Journal of Proteomics

Functional Analysis of the Hydrophilic Loop in Intracellular Trafficking of Arabidopsis PIN-FORMED Proteins

(2014) A. Ganguly et al.   PLANT CELL

Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response ofArabidopsis thalianaroots

(2014) José M. Alvarez et al.   PLANT JOURNAL

Auxin biosynthetic geneTAR2is involved in low nitrogen-mediated reprogramming of root architecture in Arabidopsis

(2014) Wenying Ma et al.   PLANT JOURNAL

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments

(2014) Javier Canales et al.   Frontiers in Plant Science

Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth

(2013) Hongtao Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants

(2013) Takeshi Obayashi et al.   PLANT AND CELL PHYSIOLOGY

Parallel Proteomic and Phosphoproteomic Analyses of Successive Stages of Maize Leaf Development

(2013) M. R. Facette et al.   PLANT CELL

Auxin-mediated nitrate signalling by NRT1.1 participates in the adaptive response ofArabidopsisroot architecture to the spatial heterogeneity of nitrate availability

(2013) EMMANUELLE MOUNIER et al.   PLANT CELL AND ENVIRONMENT

Reconstruction of protein networks from an atlas of maize seed proteotypes

(2013) J. W. Walley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots

(2013) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

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(2012) John H Morris et al.   BMC BIOINFORMATICS

PIN2 is required for the adaptation of Arabidopsis roots to alkaline stress by modulating proton secretion

(2012) Weifeng Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Modification Site Localization Scoring: Strategies and Performance

(2012) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

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(2012) Monika Zulawski et al.   NUCLEIC ACIDS RESEARCH

Quantitative Phosphoproteome Profiling of Iron-Deficient Arabidopsis Roots

(2012) P. Lan et al.   PLANT PHYSIOLOGY

Effects of three auxin-inducible LBD members on lateral root formation in Arabidopsis thaliana

(2012) Zhenhua Feng et al.   PLANTA

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(2012) R. A. Gutierrez   SCIENCE

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(2011) Kenji Hashimoto et al.   BIOCHIMIE

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(2011) Laurent Gatto et al.   BIOINFORMATICS

Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings

(2011) Wolfgang R. Engelsberger et al.   PLANT JOURNAL

Nitrogen economics of root foraging: Transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand

(2011) S. Ruffel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A framework integrating plant growth with hormones and nutrients

(2011) Gabriel Krouk et al.   TRENDS IN PLANT SCIENCE

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(2010) G. Su et al.   BIOINFORMATICS

A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression

(2010) Edward L. Huttlin et al.   CELL

Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling

(2010) P. Dhonukshe et al.   DEVELOPMENT

Nitrate-Regulated Auxin Transport by NRT1.1 Defines a Mechanism for Nutrient Sensing in Plants

(2010) Gabriel Krouk et al.   DEVELOPMENTAL CELL

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(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Phosphorylation of Conserved PIN Motifs DirectsArabidopsisPIN1 Polarity and Auxin Transport

(2010) Fang Huang et al.   PLANT CELL

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(2010) J. Kudla et al.   PLANT CELL

Nitrate regulates floral induction in Arabidopsis, acting independently of light, gibberellin and autonomous pathways

(2010) Inmaculada Castro Marín et al.   PLANTA

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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(2009) G. Philip Robertson et al.   Annual Review of Environment and Resources

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(2009) Gabriela Bindea et al.   BIOINFORMATICS

CHL1 Functions as a Nitrate Sensor in Plants

(2009) Cheng-Hsun Ho et al.   CELL

Root uptake regulation: a central process for NPS homeostasis in plants

(2009) Alain Gojon et al.   CURRENT OPINION IN PLANT BIOLOGY

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(2009) Eric A. Davidson   Nature Geoscience

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(2009) Daniel G Gibson et al.   NATURE METHODS

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

(2009) Pawel Durek et al.   NUCLEIC ACIDS RESEARCH

Feedback Inhibition of Ammonium Uptake by a Phospho-Dependent Allosteric Mechanism in Arabidopsis

(2009) V. Lanquar et al.   PLANT CELL

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(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

A Genetic Screen for Nitrate Regulatory Mutants Captures the Nitrate Transporter Gene NRT1.1

(2009) R. Wang et al.   PLANT PHYSIOLOGY

PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport

(2009) J. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A systems view of nitrogen nutrient and metabolite responses in Arabidopsis

(2008) Elena A Vidal et al.   CURRENT OPINION IN PLANT BIOLOGY

MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

(2008) S. C. Popescu et al.   GENES & DEVELOPMENT

AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response

(2008) Heng-Cheng Hu et al.   PLANT JOURNAL

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root System Architecture from Coupling Cell Shape to Auxin Transport

(2008) Marta Laskowski et al.   PLOS BIOLOGY