The genome of the freshwater monogonont rotifer Brachionus angularis: Identification of phase I, II, and III detoxification genes and their roles in molecular ecotoxicology

The genome of the marine rotifer Brachionus koreanus sheds light on the antioxidative defense system in response to 2-ethyl-phenanthrene and piperonyl butoxide

(2020) Jun Chul Park et al.   AQUATIC TOXICOLOGY

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

The genome of the marine monogonont rotifer Brachionus plicatilis: Genome-wide expression profiles of 28 cytochrome P450 genes in response to chlorpyrifos and 2-ethyl-phenanthrene

(2019) Jeonghoon Han et al.   AQUATIC TOXICOLOGY

Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex

(2019) J. Blommaert et al.   BMC GENOMICS

Adverse effects of the insecticides chlordecone and fipronil on population growth and expression of the entire cytochrome P450 ( CYP ) genes in the freshwater rotifer Brachionus calyciflorus and the marine rotifer Brachionus plicatilis

(2018) Young Hwan Lee et al.   AQUATIC TOXICOLOGY

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

(2018) Zihao Yuan et al.   BMC GENOMICS

The genome of the freshwater monogonont rotifer Brachionus calyciflorus

(2018) Hui-Su Kim et al.   Molecular Ecology Resources

Body size-dependent interspecific tolerance to cadmium and their molecular responses in the marine rotifer Brachionus spp.

(2018) Hye-Min Kang et al.   AQUATIC TOXICOLOGY

The use of non-Brachionus plicatilis species complex rotifer in larviculture

(2018) Atsushi Hagiwara et al.   HYDROBIOLOGIA

Identification of cytochrome P450 monooxygenase genes and their expression in response to high temperature in the alligatorweed flea beetle Agasicles hygrophila (Coleoptera: Chrysomelidae)

(2018) Hong Zhang et al.   Scientific Reports

The response and osmotic pressure regulation mechanism of Haliotis discus hannai (Mollusca, Gastropoda) to sudden salinity changes

(2017) Xiaolong Gao et al.   HYDROBIOLOGIA

Lifetable demography and population growth of the rotifer Brachionus angularis in Kenya: influence of temperature and food density

(2016) EO Ogello et al.   AFRICAN JOURNAL OF AQUATIC SCIENCE

Do genome size differences within Brachionus asplanchnoidis (Rotifera, Monogononta) cause reproductive barriers among geographic populations?

(2016) Simone Riss et al.   HYDROBIOLOGIA

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Quantified biotic and abiotic responses to multiple stress in freshwater, marine and ground waters

(2016) Peeter Nõges et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Rising levels of atmospheric oxygen and evolution of Nrf2

(2016) Ranko Gacesa et al.   Scientific Reports

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

What's in a genome? The C-value enigma and the evolution of eukaryotic genome content

(2015) Tyler A. Elliott et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Expression Pattern of Entire Cytochrome P450 Genes and Response of Defensomes in the Benzo[a]pyrene-Exposed Monogonont Rotifer Brachionus koreanus

(2013) Ryeo-Ok Kim et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DO FRESHWATER FISHES DIVERSIFY FASTER THAN MARINE FISHES? A TEST USING STATE-DEPENDENT DIVERSIFICATION ANALYSES AND MOLECULAR PHYLOGENETICS OF NEW WORLD SILVERSIDES (ATHERINOPSIDAE)

(2013) Devin D. Bloom et al.   EVOLUTION

The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s

(2013) D. R. Nelson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sigma Class Glutathione Transferase from the Liver Fluke Fasciola hepatica

(2012) E. James LaCourse et al.   PLoS Neglected Tropical Diseases

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A Laotian strain of the rotifer Brachionus angularis holds promise as a food source for small-mouthed larvae of freshwater fish in aquaculture

(2010) Yuka Ogata et al.   AQUACULTURE

Ecotoxicology, ecophysiology, and mechanistic studies with rotifers

(2010) Hans-U. Dahms et al.   AQUATIC TOXICOLOGY

Ecological strategy of rotifer (Brachionus calyciflorus) exposed to predator- and competitor-conditioned media

(2010) Ruixin Guo et al.   HYDROBIOLOGIA

A first assessment of genome size diversity in Monogonont rotifers

(2010) Claus-Peter Stelzer   HYDROBIOLOGIA

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

Identification of CYP genes in Mytilus (mussel) and Crassostrea (oyster) species: First approach to the full complement of cytochrome P450 genes in bivalves

(2009) Juliano Zanette et al.   MARINE ENVIRONMENTAL RESEARCH

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH