The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s

Origins of P450 diversity

(2013) H. Sezutsu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Human cytochromes P450 in health and disease

(2013) D. W. Nebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Confutation of the existence of sequence-conserved cytochrome P450 enzymes in Plasmodium falciparum

(2011) Raewadee Wisedpanichkij et al.   ACTA TROPICA

A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes

(2011) Diana Chernikova et al.   Biology Direct

Bimodal targeting of cytochrome P450s to endoplasmic reticulum and mitochondria: the concept of chimeric signals

(2011) Narayan G. Avadhani et al.   FEBS Journal

Extreme mitochondrial evolution in the ctenophoreMnemiopsis leidyi: Insight from mtDNA and the nuclear genome

(2011) Walker Pett et al.   Mitochondrial DNA

Rooting the Eukaryotic Tree with Mitochondrial and Bacterial Proteins

(2011) R. Derelle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic and functional analyses of the cytochrome P450 family 4

(2011) Nina L. Kirischian et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Higher-level metazoan relationships: recent progress and remaining questions

(2011) Gregory D. Edgecombe et al.   ORGANISMS DIVERSITY & EVOLUTION

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Arthropod CYPomes illustrate the tempo and mode in P450 evolution

(2010) R. Feyereisen   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Molecular evolution of glutamine synthetase II: Phylogenetic evidence of a non-endosymbiotic gene transfer event early in plant evolution

(2010) Sohini Ghoshroy et al.   BMC EVOLUTIONARY BIOLOGY

Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish

(2010) Jared V Goldstone et al.   BMC GENOMICS

Cytochrome P450 CYP2 genes in the common cormorant: Evolutionary relationships with 130 diapsid CYP2 clan sequences and chemical effects on their expression

(2010) Akira Kubota et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Origin and evolution of the ligand-binding ability of nuclear receptors

(2010) Gabriel V. Markov et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

The invasion of the land by plants: when and where?

(2010) Charles H. Wellman   NEW PHYTOLOGIST

The UCSC Genome Browser database: update 2011

(2010) P. A. Fujita et al.   NUCLEIC ACIDS RESEARCH

The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

(2010) Joseph F Ryan et al.   EvoDevo

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

(2009) Giovanni Emiliani et al.   Biology Direct

The cytochrome P450 (CYP) gene superfamily in Daphnia pulex

(2009) William S Baldwin et al.   BMC GENOMICS

Automated identification of conserved synteny after whole-genome duplication

(2009) J. M. Catchen et al.   GENOME RESEARCH

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

The oldest articulated osteichthyan reveals mosaic gnathostome characters

(2009) Min Zhu et al.   NATURE

Independent elaboration of steroid hormone signaling pathways in metazoans

(2009) G. V. Markov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A synthesized pheromone induces upstream movement in female sea lamprey and summons them into traps

(2009) N. S. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Insights into Cyclostome Phylogenomics: Pre-2R or Post-2R

(2009) Shigehiro Kuraku   ZOOLOGICAL SCIENCE

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis

(2008) J. V. Goldstone   CELL BIOLOGY AND TOXICOLOGY

Timing of Genome Duplications Relative to the Origin of the Vertebrates: Did Cyclostomes Diverge before or after?

(2008) S. Kuraku et al.   MOLECULAR BIOLOGY AND EVOLUTION

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes

(2008) Dong-Sun Lee et al.   NATURE

The Trichoplax genome and the nature of placozoans

(2008) Mansi Srivastava et al.   NATURE

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

The UCSC Genome Browser Database: update 2009

(2008) R. M. Kuhn et al.   NUCLEIC ACIDS RESEARCH

CYP3 phylogenomics: evidence for positive selection of CYP3A4 and CYP3A7

(2008) Huan Qiu et al.   Pharmacogenetics and Genomics

The Early ANTP Gene Repertoire: Insights from the Placozoan Genome

(2008) Bernd Schierwater et al.   PLoS One

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY