LncRNA TCONS_00021861 is functionally associated with drought tolerance in rice (Oryza sativa L.) via competing endogenous RNA regulation

Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice

(2021) Xiaoping Huang et al.   PLANT MOLECULAR BIOLOGY

Non-coding RNAs having strong positive interaction with mRNAs reveal their regulatory nature during flowering in a wild relative of pigeonpea (Cajanus scarabaeoides)

(2020) Antara Das et al.   MOLECULAR BIOLOGY REPORTS

Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction

(2019) Ning Jiang et al.   Horticulture Research

Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice

(2019) Ping Li et al.   Frontiers in Genetics

Genome-wide Identification of LncRNAs and Analysis of CeRNA Networks during Tomato Resistance to Phytophthora infestans

(2019) Jun Cui et al.   PHYTOPATHOLOGY

Transcriptional landscape of pathogen‐responsive lnc RNA s in rice unveils the role of ALEX 1 in jasmonate pathway and disease resistance

(2019) Yang Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Systematic Characterization of Long Non-Coding RNAs and Their Responses to Drought Stress in Dongxiang Wild Rice

(2019) Qi Weidong et al.   Rice Science

Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

(2018) Liang Chen et al.   BMC GENOMICS

Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

(2018) Sang-Yoon Shin et al.   BMC GENOMICS

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

(2018) Fenni Deng et al.   BMC PLANT BIOLOGY

Arabidopsis thaliana ambient temperature responsive lncRNAs

(2018) Edouard Severing et al.   BMC PLANT BIOLOGY

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice

(2018) Ying Wang et al.   Nature Communications

PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea

(2017) Urminder Singh et al.   NUCLEIC ACIDS RESEARCH

Alleviatory effects of silicon on the foliar micromorphology and anatomy of rice (Oryza sativa L.) seedlings under simulated acid rain

(2017) Shuming Ju et al.   PLoS One

Transcriptomic Analysis of Long Non-Coding RNAs and Coding Genes Uncovers a Complex Regulatory Network That Is Involved in Maize Seed Development

(2017) Ming Zhu et al.   Genes

A long noncoding RNA involved in rice reproductive development by negatively regulating osa-miR160

(2017) Meng Wang et al.   Science Bulletin

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Characterization of long non-coding RNAs involved in cadmium toxic response in Brassica napus

(2016) Sheng Jun Feng et al.   RSC Advances

Transgenic poplar expressing Arabidopsis YUCCA6 exhibits auxin-overproduction phenotypes and increased tolerance to abiotic stress

(2015) Qingbo Ke et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

A chloroplast-targeted DnaJ protein contributes to maintenance of photosystem II under chilling stress

(2013) Fanying Kong et al.   JOURNAL OF EXPERIMENTAL BOTANY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Overexpression of Arabidopsis YUCCA6 in Potato Results in High-Auxin Developmental Phenotypes and Enhanced Resistance to Water Deficit

(2012) Jeong Im Kim et al.   Molecular Plant

A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferaseOsTAR1and a grain-specificYUCCA

(2012) Yousef M. Abu-Zaitoon et al.   PHYSIOLOGIA PLANTARUM

microRNAs Associated with Drought Response in the Bioenergy Crop Sugarcane (Saccharum spp.)

(2012) Thaís Helena Ferreira et al.   PLoS One

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Activation of a flavin monooxygenase gene YUCCA7 enhances drought resistance in Arabidopsis

(2011) Minyoung Lee et al.   PLANTA

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY