Transcriptomic Analysis of Long Non-Coding RNAs and Coding Genes Uncovers a Complex Regulatory Network That Is Involved in Maize Seed Development

Signaling in Early Maize Kernel Development

(2017) Nicolas M. Doll et al.   Molecular Plant

lncRNA-UCA1 enhances cell proliferation through functioning as a ceRNA of Sox4 in esophageal cancer

(2016) Changjie Jiao et al.   ONCOLOGY REPORTS

The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice

(2016) Shuangcheng Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Overexpression of a tomato miR171 target geneSlGRAS24impacts multiple agronomical traits via regulating gibberellin and auxin homeostasis

(2016) Wei Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Auxin response under osmotic stress

(2016) Victoria Naser et al.   PLANT MOLECULAR BIOLOGY

Characterization of long non-coding RNA-associated ceRNA network to reveal potential prognostic lncRNA biomarkers in human ovarian cancer

(2016) Meng Zhou et al.   Oncotarget

Changing expression profiles of lncRNAs, mRNAs, circRNAs and miRNAs during osteoclastogenesis

(2016) Ce Dou et al.   Scientific Reports

Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

(2015) Chunyan Fan et al.   BMC GENOMICS

The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits

(2015) Hai Wang et al.   Molecular Plant

RNA Sequencing of Laser-Capture Microdissected Compartments of the Maize Kernel Identifies Regulatory Modules Associated with Endosperm Cell Differentiation

(2015) Junpeng Zhan et al.   PLANT CELL

Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting

(2015) Jolly Basak et al.   Frontiers in Plant Science

PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme

(2014) Aimin Li et al.   BMC BIOINFORMATICS

miR444a has multiple functions in the rice nitrate-signaling pathway

(2014) Yongsheng Yan et al.   PLANT JOURNAL

Dynamic Transcriptome Landscape of Maize Embryo and Endosperm Development

(2014) Jian Chen et al.   PLANT PHYSIOLOGY

lnCeDB: Database of Human Long Noncoding RNA Acting as Competing Endogenous RNA

(2014) Shaoli Das et al.   PLoS One

Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing

(2014) G. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competing Endogenous RNA: The Key to Posttranscriptional Regulation

(2014) Rituparno Sen et al.   TheScientificWorldJOURNAL

Long noncoding RNA associated-competing endogenous RNAs in gastric cancer

(2014) Tian Xia et al.   Scientific Reports

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis

(2013) Ke Liu et al.   BIOINFORMATICS

Transcriptome analysis of embryo maturation in maize

(2013) Keat Thomas Teoh et al.   BMC PLANT BIOLOGY

Embryo and endosperm, partners in seed development

(2013) Clément Lafon-Placette et al.   CURRENT OPINION IN PLANT BIOLOGY

Repressing the Repressor: A lincRNA as a MicroRNA Sponge in Embryonic Stem Cell Self-Renewal

(2013) Ee-chun Cheng et al.   DEVELOPMENTAL CELL

Endogenous miRNA Sponge lincRNA-RoR Regulates Oct4, Nanog, and Sox2 in Human Embryonic Stem Cell Self-Renewal

(2013) Yue Wang et al.   DEVELOPMENTAL CELL

Expression profiling of lncRNAs in C3H10T1/2 mesenchymal stem cells undergoing early osteoblast differentiation

(2013) CHANGQING ZUO et al.   Molecular Medicine Reports

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

NITROGEN LIMITATION ADAPTATION, a Target of MicroRNA827, Mediates Degradation of Plasma Membrane-Localized Phosphate Transporters to Maintain Phosphate Homeostasis in Arabidopsis

(2013) W.-Y. Lin et al.   PLANT CELL

The Differential Transcription Network between Embryo and Endosperm in the Early Developing Maize Seed

(2013) X. Lu et al.   PLANT PHYSIOLOGY

Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination

(2013) W.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Transcriptome Study Outlines Ontogeny of the Maize Shoot Apical Meristem

(2012) N. A. Eckardt   PLANT CELL

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Molecular Functions of Long Non-Coding RNAs in Plants

(2012) Qian-Hao Zhu et al.   Genes

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Double fertilization on the move

(2011) Yuki Hamamura et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

(2010) Jiayi Wang et al.   NUCLEIC ACIDS RESEARCH