Arabidopsis thaliana ambient temperature responsive lncRNAs

Functional Classification and Experimental Dissection of Long Noncoding RNAs

(2018) Florian Kopp et al.   CELL

ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis

(2017) Jun Sung Seo et al.   PLANT CELL

Thermosensing Enlightened

(2017) Carolin Delker et al.   TRENDS IN PLANT SCIENCE

In Silico identification and annotation of non-coding RNAs by RNA-seq and De Novo assembly of the transcriptome of Tomato Fruits

(2017) Daria Scarano et al.   PLoS One

Arabidopsis CBF3 and DELLAs positively regulate each other in response to low temperature

(2017) Mingqi Zhou et al.   Scientific Reports

Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days

(2016) Virginia Fernández et al.   PLANT JOURNAL

Phytochrome B integrates light and temperature signals in Arabidopsis

(2016) Martina Legris et al.   SCIENCE

Phytochromes function as thermosensors in Arabidopsis

(2016) Jae-Hoon Jung et al.   SCIENCE

Plasticity versus Adaptation of Ambient–Temperature Flowering Response

(2016) Alice Pajoro et al.   TRENDS IN PLANT SCIENCE

Molecular and genetic control of plant thermomorphogenesis

(2016) Marcel Quint et al.   Nature Plants

PIF4 and ELF3 Act Independently in Arabidopsis thaliana Thermoresponsive Flowering

(2016) Maximilian O. Press et al.   PLoS One

ELF3 Controls Thermoresponsive Growth in Arabidopsis

(2015) Mathew S. Box et al.   CURRENT BIOLOGY

Role of alternative pre-mRNA splicing in temperature signaling

(2015) Giovanna Capovilla et al.   CURRENT OPINION IN PLANT BIOLOGY

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana

(2015) Frédéric Bouché et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2015)   NUCLEIC ACIDS RESEARCH

CANTATAdb: A Collection of Plant Long Non-Coding RNAs

(2015) Michał W. Szcześniak et al.   PLANT AND CELL PHYSIOLOGY

Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering inArabidopsis thaliana

(2015) Vinicius Costa Galvão et al.   PLANT JOURNAL

SHORT VEGETATIVE PHASE Up-RegulatesTEMPRANILLO2Floral Repressor at Low Ambient Temperatures

(2015) Esther Marín-González et al.   PLANT PHYSIOLOGY

Battles and hijacks: noncoding transcription in plants

(2015) Federico Ariel et al.   TRENDS IN PLANT SCIENCE

Long Non-coding RNAs and Their Biological Roles in Plants

(2015) Xue Liu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

MAF2 Is Regulated by Temperature-Dependent Splicing and Represses Flowering at Low Temperatures in Parallel with FLM

(2015) Chiara A. Airoldi et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Class I TCP-DELLA Interactions in Inflorescence Shoot Apex Determine Plant Height

(2014) Jean-Michel Davière et al.   CURRENT BIOLOGY

A MYB-Domain Protein EFM Mediates Flowering Responses to Environmental Cues in Arabidopsis

(2014) Yuanyuan Yan et al.   DEVELOPMENTAL CELL

Meristem size contributes to the robustness of phyllotaxis in Arabidopsis

(2014) Benoit Landrein et al.   JOURNAL OF EXPERIMENTAL BOTANY

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

(2014) Federico Ariel et al.   MOLECULAR CELL

Araport: the Arabidopsis Information Portal

(2014) Vivek Krishnakumar et al.   NUCLEIC ACIDS RESEARCH

Distinct roles of FKF1, GIGANTEA, and ZEITLUPE proteins in the regulation of CONSTANS stability inArabidopsisphotoperiodic flowering

(2014) Young Hun Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Research on floral timing by ambient temperature comes into blossom

(2014) Leonie Verhage et al.   TRENDS IN PLANT SCIENCE

Arabidopsis RRP6L1 and RRP6L2 Function in FLOWERING LOCUS C Silencing via Regulation of Antisense RNA Synthesis

(2014) Jun-Hye Shin et al.   PLoS Genetics

Insights into eukaryotic Rubisco assembly — Crystal structures of RbcX chaperones from Arabidopsis thaliana

(2013) Piotr Kolesinski et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

PLncDB: plant long non-coding RNA database

(2013) J. Jin et al.   BIOINFORMATICS

Ambient temperature signalling in plants

(2013) Philip A Wigge   CURRENT OPINION IN PLANT BIOLOGY

Temperature-dependent regulation of flowering by antagonistic FLM variants

(2013) David Posé et al.   NATURE

Cytochrome P450 CYP78A9 Is Involved in Arabidopsis Reproductive Development

(2013) M. Sotelo-Silveira et al.   PLANT PHYSIOLOGY

Regulation of Temperature-Responsive Flowering by MADS-Box Transcription Factor Repressors

(2013) J. H. Lee et al.   SCIENCE

Transcription factor PIF4 controls the thermosensory activation of flowering

(2012) S. Vinod Kumar et al.   NATURE

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana

(2012) Sarah Marie Rosloski et al.   PLANT MOLECULAR BIOLOGY

Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators

(2012) R. G. H. Immink et al.   PLANT PHYSIOLOGY

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FKF1 Conveys Timing Information for CONSTANS Stabilization in Photoperiodic Flowering

(2012) Y. H. Song et al.   SCIENCE

TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis

(2011) Martin Kieffer et al.   PLANT JOURNAL

Initial characteristics of RbcX proteins from Arabidopsis thaliana

(2011) Piotr Kolesiński et al.   PLANT MOLECULAR BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The CBFs: Three arabidopsis transcription factors to cold acclimate

(2010) Joaquín Medina et al.   PLANT SCIENCE

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15

(2009) Y. Zheng et al.   PLANT CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY