A major QTL and candidate genes for capsaicinoid biosynthesis in the pericarp of Capsicum chinense revealed using QTL-seq and RNA-seq

QTL mapping and GWAS reveal candidate genes controlling capsaicinoid content in Capsicum

(2018) Koeun Han et al.   PLANT BIOTECHNOLOGY JOURNAL

Mutation in the putative ketoacyl-ACP reductase CaKR1 induces loss of pungency in Capsicum

(2018) Sota Koeda et al.   THEORETICAL AND APPLIED GENETICS

Identification and molecular genetic mapping of Chili veinal mottle virus (ChiVMV) resistance genes in pepper (Capsicum annuum)

(2017) Joung-Ho Lee et al.   MOLECULAR BREEDING

QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

(2017) Manish K. Pandey et al.   PLANT BIOTECHNOLOGY JOURNAL

Quantitative trait loci from identification to exploitation for crop improvement

(2017) Jitendra Kumar et al.   PLANT CELL REPORTS

An R2R3-MYB Transcription Factor Regulates Capsaicinoid Biosynthesis

(2017) Magda L. Arce-Rodríguez et al.   PLANT PHYSIOLOGY

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum)

(2016) Koeun Han et al.   DNA RESEARCH

Usefulness of the cloned and fine-mapped genes/QTL for grain yield and related traits in indica rice breeding for irrigated ecosystems

(2016) Shanshan Liang et al.   FIELD CROPS RESEARCH

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

(2016) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

QTL mapping for capsaicin and dihydrocapsaicin content in a population ofCapsicum annuum‘NB1’ × Capsicum chinense‘Bhut Jolokia’

(2016) Jundae Lee et al.   PLANT BREEDING

Difference in capsaicinoid biosynthesis gene expression in the pericarp reveals elevation of capsaicinoid contents in chili peppers (Capsicum chinense)

(2016) Yoshiyuki Tanaka et al.   PLANT CELL REPORTS

Discovery of putative capsaicin biosynthetic genes by RNA-Seq and digital gene expression analysis of pepper

(2016) Zi-Xin Zhang et al.   Scientific Reports

Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum annuum L

(2016) Padma Nimmakayala et al.   Scientific Reports

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F2 maize population

(2014) Zongliang Chen et al.   BMC GENOMICS

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper

(2014) Wing-Yee Liu et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Fruit specific variability in capsaicinoid accumulation and transcription of structural and regulatory genes in Capsicum fruit

(2013) Neda Keyhaninejad et al.   PLANT SCIENCE

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

De Novo Transcriptome Assembly in Chili Pepper (Capsicum frutescens) to Identify Genes Involved in the Biosynthesis of Capsaicinoids

(2013) Shaoqun Liu et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population

(2012) Shawn C. Yarnes et al.   GENOME

Biosynthesis of capsinoid is controlled by the Pun1 locus in pepper

(2012) Koeun Han et al.   MOLECULAR BREEDING

Induction of capsaicinoid accumulation in placental tissues of Capsicum chinense Jacq. requires primary ammonia assimilation

(2012) Wendy del R. Ancona-Escalante et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations

(2012) Hoa T. Truong et al.   PLoS One

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Recent advances in the study on capsaicinoids and capsinoids

(2010) Xiu-Ju Luo et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Molecular biology of capsaicinoid biosynthesis in chili pepper (Capsicum spp.)

(2010) Cesar Aza-González et al.   PLANT CELL REPORTS

A Dynamic Interface for Capsaicinoid Systems Biology

(2009) M. Mazourek et al.   PLANT PHYSIOLOGY

Genetic mapping of the crown gall resistance gene of the wild apple Malus sieboldii

(2009) Shigeki Moriya et al.   Tree Genetics & Genomes

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols