Genome-wide association screening and verification of potential genes associated with root architectural traits in maize (Zea mays L.) at multiple seedling stages

Genome-wide association studies in the genetic dissection of ovule number, seed number, and seed weight in Brassica napus L.

(2019) Shahid Ullah Khan et al.   INDUSTRIAL CROPS AND PRODUCTS

The Quantitative Genetic Control of Root Architecture in Maize

(2018) Adam L Bray et al.   PLANT AND CELL PHYSIOLOGY

Genome-wide association studies of doubled haploid exotic introgression lines for root system architecture traits in maize ( Zea mays L.)

(2018) Darlene L. Sanchez et al.   PLANT SCIENCE

Genome-Wide Association Studies of 11 Agronomic Traits in Cassava (Manihot esculenta Crantz)

(2018) Shengkui Zhang et al.   Frontiers in Plant Science

Single-Locus and Multi-Locus Genome-Wide Association Studies in the Genetic Dissection of Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.)

(2018) Chengqi Li et al.   Frontiers in Plant Science

An Updated Gene Atlas for Maize Reveals Organ‐Specific and Stress‐Induced Genes

(2018) Genevieve M Hoopes et al.   PLANT JOURNAL

Root Phenotyping for Drought Tolerance: A Review

(2018) Allah Wasaya et al.   Agronomy-Basel

Identification of favorable SNP alleles and candidate genes for seedlessness in Vitis vinifera L. using genome-wide association mapping

(2017) Heng Zhang et al.   EUPHYTICA

Identification of quantitative trait loci for seedling root traits from Tibetan semi-wild wheat (Triticum aestivum subsp. tibetanum)

(2017) Jian Ma et al.   GENOME

Genetic dissection of maize seedling root system architecture traits using an ultra-high density bin-map and a recombinant inbred line population

(2016) Weibin Song et al.   Journal of Integrative Plant Biology

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

(2016) Samuel Crowell et al.   Nature Communications

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

(2016) Scott C. Stelpflug et al.   Plant Genome

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

Genomic Regions Associated with Root Traits under Drought Stress in Tropical Maize (Zea mays L.)

(2016) P. H. Zaidi et al.   PLoS One

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

Genome-wide association analysis of seedling root development in maize (Zea mays L.)

(2015) Jordon Pace et al.   BMC GENOMICS

Regulation of plant root system architecture: implications for crop advancement

(2015) Eric D Rogers et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genomic prediction of seedling root length in maize (Zea maysL.)

(2015) Jordon Pace et al.   PLANT JOURNAL

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics

(2015) Abhiram Das et al.   Plant Methods

Association analysis of genes involved in maize (Zea mays L.) root development with seedling and agronomic traits under contrasting nitrogen levels

(2015) Adel H. Abdel-Ghani et al.   PLANT MOLECULAR BIOLOGY

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

(2015) Rubén Rellán-Álvarez et al.   eLife

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots

(2015) Olga Symonova et al.   PLoS One

Quantitative trait loci mapping for kernel row number using chromosome segment substitution lines in maize

(2014) F. Li et al.   GENETICS AND MOLECULAR RESEARCH

Roothairless5, which functions in maize (Zea maysL.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase

(2014) Josefine Nestler et al.   PLANT JOURNAL

Natural Variation of Root Traits: From Development to Nutrient Uptake

(2014) D. Ristova et al.   PLANT PHYSIOLOGY

Association analysis of single nucleotide polymorphisms in candidate genes with root traits in maize (Zea mays L.) seedlings

(2014) Bharath Kumar et al.   PLANT SCIENCE

Analysis of Maize (Zea mays L.) Seedling Roots with the High-Throughput Image Analysis Tool ARIA (Automatic Root Image Analysis)

(2014) Jordon Pace et al.   PLoS One

Field Phenotyping of Soybean Roots for Drought Stress Tolerance

(2014) Berhanu Fenta et al.   Agronomy-Basel

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

A rapid, controlled-environment seedling root screen for wheat correlates well with rooting depths at vegetative, but not reproductive, stages at two field sites

(2013) M. Watt et al.   ANNALS OF BOTANY

IJ_Rhizo: an open-source software to measure scanned images of root samples

(2013) Alain Pierret et al.   PLANT AND SOIL

Recovering Root System Traits Using Image Analysis Exemplified by Two-Dimensional Neutron Radiography Images of Lupine

(2013) D. Leitner et al.   PLANT PHYSIOLOGY

RootNav: Navigating Images of Complex Root Architectures

(2013) M. P. Pound et al.   PLANT PHYSIOLOGY

Root traits contributing to plant productivity under drought

(2013) Louise H. Comas et al.   Frontiers in Plant Science

Association genetics of chilling injury susceptibility in peach (Prunus persica (L.) Batsch) across multiple years

(2013) Arun Prabhu Dhanapal et al.   3 Biotech

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

Genotypic variation and relationships between seedling and adult plant traits in maize (Zea mays L.) inbred lines grown under contrasting nitrogen levels

(2012) Adel H. Abdel-Ghani et al.   EUPHYTICA

Mapping QTLs for seedling root traits in a doubled haploid wheat population under different water regimes

(2012) Xiulin Liu et al.   EUPHYTICA

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

(2012) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

(2012) RANDY T. CLARK et al.   PLANT CELL AND ENVIRONMENT

Mapping QTLs for root system architecture of maize (Zea mays L.) in the field at different developmental stages

(2012) Hongguang Cai et al.   THEORETICAL AND APPLIED GENETICS

Major quantitative trait loci for seminal root morphology of wheat seedlings

(2011) Yongzhe Ren et al.   MOLECULAR BREEDING

A consensus map of QTLs controlling the root length of maize

(2011) Andreas Hund et al.   PLANT AND SOIL

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Rootless with undetectable meristem 1 encodes a monocot-specific AUX/IAA protein that controls embryonic seminal and post-embryonic lateral root initiation in maize

(2011) Inga von Behrens et al.   PLANT JOURNAL

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Shoot growth potential drives N uptake in maize plants and correlates with root growth in the soil

(2009) Yunfeng Peng et al.   FIELD CROPS RESEARCH

Root based approaches to improving nitrogen use efficiency in plants

(2009) TREVOR GARNETT et al.   PLANT CELL AND ENVIRONMENT

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics