Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

Natural Variation in the Flag Leaf Morphology of Rice Due to a Mutation of theNARROW LEAF 1Gene inOryza sativaL.

(2015) Fumio Taguchi-Shiobara et al.   GENETICS

Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL

(2015) Shalabh Dixit et al.   Scientific Reports

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

(2015) Jennifer Spindel et al.   PLoS Genetics

Natural Variation in the Flag Leaf Morphology of Rice Due to a Mutation of theNARROW LEAF 1Gene inOryza sativaL.

(2015) Fumio Taguchi-Shiobara et al.   GENETICS

Characterization of a Null Allelic Mutant of the Rice NAL1 Gene Reveals Its Role in Regulating Cell Division

(2015) Dan Jiang et al.   PLoS One

Molecular Control of Grass Inflorescence Development

(2014) Dabing Zhang et al.   Annual Review of Plant Biology

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

LSCHL4 from Japonica Cultivar, Which Is Allelic to NAL1 , Increases Yield of Indica Super Rice 93-11

(2014) Guang-Heng Zhang et al.   Molecular Plant

High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama

(2014) S. Crowell et al.   PLANT PHYSIOLOGY

A Proteomic Study on Molecular Mechanism of Poor Grain-Filling of Rice (Oryza sativa L.) Inferior Spikelets

(2014) Zhixing Zhang et al.   PLoS One

Regulatory modules controlling maize inflorescence architecture

(2013) A. L. Eveland et al.   GENOME RESEARCH

OsLG1 regulates a closed panicle trait in domesticated rice

(2013) Takashige Ishii et al.   NATURE GENETICS

NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars

(2013) D. Fujita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate

(2013) Toshiyuki Takai et al.   Scientific Reports

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

RiceFREND: a platform for retrieving coexpressed gene networks in rice

(2012) Yutaka Sato et al.   NUCLEIC ACIDS RESEARCH

Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro

(2012) Tomoaki Sakamoto et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

(2011) Yutaka Sato et al.   BMC PLANT BIOLOGY

Diversity of panicle branching patterns in wild relatives of rice

(2011) Shinichiro Yamaki et al.   BREEDING SCIENCE

Flower development in rice

(2011) Hitoshi Yoshida et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Distinct Genetic Architectures for Male and Female Inflorescence Traits of Maize

(2011) Patrick J. Brown et al.   PLoS Genetics

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Branching in rice

(2010) Yonghong Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Evaluation of yield performance in rice near-isogenic lines with increased spikelet number

(2010) Akihiro Ohsumi et al.   FIELD CROPS RESEARCH

A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice

(2010) Wen-Hao Yan et al.   Molecular Plant

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Mapping complex disease traits with global gene expression

(2009) William Cookson et al.   NATURE REVIEWS GENETICS

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

(2009) Y. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Progress in ideotype breeding to increase rice yield potential

(2008) Shaobing Peng et al.   FIELD CROPS RESEARCH

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Ehd2, a Rice Ortholog of the Maize INDETERMINATE1 Gene, Promotes Flowering by Up-Regulating Ehd1

(2008) K. Matsubara et al.   PLANT PHYSIOLOGY