Competition-based screening helps to secure the evolutionary stability of a defensive microbiome

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Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota

(2021) Kathrin Wippel et al.   Nature Microbiology

Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus

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The Life of an Insect Endosymbiont from the Cradle to the Grave

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The Evolution and Ecology of Bacterial Warfare

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Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability

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Consistent and correctable bias in metagenomic sequencing experiments

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Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Host–symbiont specificity determined by microbe–microbe competition in an insect gut

(2019) Hideomi Itoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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Complete genome sequence of Streptomyces formicae KY5, the formicamycin producer

(2018) Neil A. Holmes et al.   JOURNAL OF BIOTECHNOLOGY

Symbiont selection via alcohol benefits fungus farming by ambrosia beetles

(2018) Christopher M. Ranger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemical warfare between leafcutter ant symbionts and a co-evolved pathogen

(2018) Daniel Heine et al.   Nature Communications

Microbial community composition of nest-carton and adjoining soil of the ant Lasius fuliginosus and the role of host secretions in structuring microbial communities

(2018) Pina Brinker et al.   Fungal Ecology

The evolution of abdominal microbiomes in fungus‐growing ants

(2018) Panagiotis Sapountzis et al.   MOLECULAR ECOLOGY

Reconstructing the functions of endosymbiotic Mollicutes in fungus-growing ants

(2018) Panagiotis Sapountzis et al.   eLife

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

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ProCarDB: a database of bacterial carotenoids

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Single cell stable isotope probing in microbiology using Raman microspectroscopy

(2016) Yun Wang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Tracking microbial interactions with NanoSIMS

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Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

(2016) Alexander J. Westermann et al.   NATURE

Small genome of the fungusEscovopsis weberi, a specialized disease agent of ant agriculture

(2016) Tom J. B. de Man et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Analysis of Two Pseudonocardia Phylotypes Associated with Acromyrmex Leafcutter Ants Reveals Their Biosynthetic Potential

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Subtilosin Prevents Biofilm Formation by Inhibiting Bacterial Quorum Sensing

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Interaction specificity between leaf-cutting ants and vertically transmitted Pseudonocardia bacteria

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Fitting Linear Mixed-Effects Models Usinglme4

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HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Functional role of phenylacetic acid from metapleural gland secretions in controlling fungal pathogens in evolutionarily derived leaf-cutting ants

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HTSeq--a Python framework to work with high-throughput sequencing data

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Metabolite induction via microorganism co-culture: A potential way to enhance chemical diversity for drug discovery

(2014) Samuel Bertrand et al.   BIOTECHNOLOGY ADVANCES

Sioxanthin, a novel glycosylated carotenoid, reveals an unusual subclustered biosynthetic pathway

(2014) Taylor K. S. Richter et al.   ENVIRONMENTAL MICROBIOLOGY

Symbiotic digestion of lignocellulose in termite guts

(2014) Andreas Brune   NATURE REVIEWS MICROBIOLOGY

Interaction between Workers during a Short Time Window Is Required for Bacterial Symbiont Transmission in Acromyrmex Leaf-Cutting Ants

(2014) Sarah E. Marsh et al.   PLoS One

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(2014) Henrik H. De Fine Licht et al.   Nature Communications

Regulation of antimycin biosynthesis by the orphan ECF RNA polymerase sigma factorσAntA

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Let the best one stay: screening of ant defenders byAcaciahost plants functions independently of partner choice or host sanctions

(2013) Martin Heil   JOURNAL OF ECOLOGY

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Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

(2013) D. Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

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Analysis of the bacterial communities associated with two ant-plant symbioses

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How to assemble a beneficial microbiome in three easy steps

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Dynamic Wolbachia prevalence in Acromyrmex leaf-cutting ants: potential for a nutritional symbiosis

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Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Bacteriocins — a viable alternative to antibiotics?

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Benzoxazinoids in Root Exudates of Maize Attract Pseudomonas putida to the Rhizosphere

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The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

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A Single Streptomyces Symbiont Makes Multiple Antifungals to Support the Fungus Farming Ant Acromyrmex octospinosus

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Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants

(2011) Ilka Schoenian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Let the Right One In: A Microeconomic Approach to Partner Choice in Mutualisms

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A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus

(2010) Jörg Barke et al.   BMC BIOLOGY

Streptomyces scabies87-22 Contains a Coronafacic Acid-Like Biosynthetic Cluster That Contributes to Plant–Microbe Interactions

(2010) Dawn R. D. Bignell et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Human milk glycobiome and its impact on the infant gastrointestinal microbiota

(2010) A. M. Zivkovic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters

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Host legume-exuded antimetabolites optimize the symbiotic rhizosphere

(2009) Tao Cai et al.   MOLECULAR MICROBIOLOGY

Rhizosphere engineering and management for sustainable agriculture

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Candicidin-producing Streptomyces support leaf-cutting ants to protect their fungus garden against the pathogenic fungus Escovopsis

(2009) S. Haeder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generalized antifungal activity and 454-screening of Pseudonocardia and Amycolatopsis bacteria in nests of fungus-growing ants

(2009) R. Sen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Polymicrobial Nature of Chronic Diabetic Foot Ulcer Biofilm Infections Determined Using Bacterial Tag Encoded FLX Amplicon Pyrosequencing (bTEFAP)

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