eDNA metabarcoding illuminates species diversity and composition of three phyla (chordata, mollusca and echinodermata) across Indonesian coral reefs

eDNA metabarcoding survey reveals fine‐scale coral reef community variation across a remote, tropical island ecosystem

(2020) Katrina M. West et al.   MOLECULAR ECOLOGY

Environmental DNA can act as a biodiversity barometer of anthropogenic pressures in coastal ecosystems

(2020) Joseph D. DiBattista et al.   Scientific Reports

Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle

(2020) Jean-Baptiste Juhel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient

(2019) Joseph D. DiBattista et al.   PeerJ

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events

(2019) Tina E. Berry et al.   PLoS Genetics

Wildlife trade, CITES and the protection of marine molluscs in Indonesia

(2019) Vincent Nijman   MOLLUSCAN RESEARCH

Anacapa Toolkit : an environmental DNA toolkit for processing multilocus metabarcode datasets

(2019) Emily E. Curd et al.   Methods in Ecology and Evolution

Using eDNA to biomonitor the fish community in a tropical oligotrophic lake

(2019) Martha Valdez-Moreno et al.   PLoS One

A review on the applications and recent advances in environmental DNA (eDNA) metagenomics

(2019) Deviram Garlapati et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Keeping up with introduced marine species at a remote biodiversity hotspot: awareness, training and collaboration across different sectors is key

(2019) Mareike Huhn et al.   BIOLOGICAL INVASIONS

Development of a multi-assay approach for monitoring coral diversity using eDNA metabarcoding

(2019) Jason B. Alexander et al.   CORAL REEFS

Demonstration of the Use of Environmental DNA for the Non-Invasive Genotyping of a Bivalve Mollusk, the European Flat Oyster (Ostrea edulis)

(2019) Luke E. Holman et al.   Frontiers in Genetics

Genetic diversity of a hitchhiker and prized food source in the Anthropocene: the Asian green mussel Perna viridis (Mollusca, Mytilidae)

(2018) P. Joana Dias et al.   BIOLOGICAL INVASIONS

Freshwater fisheries assessment using environmental DNA: A primer on the method, its potential, and shortcomings as a conservation tool

(2018) Nathan T. Evans et al.   FISHERIES RESEARCH

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Raja Ampat: A Biodiversity Hot Spot and the Future of Marine Conservation

(2017) Kieran Cox et al.   FISHERIES

Comparative Cost and Effort of Fish Distribution Detection via Environmental DNA Analysis and Electrofishing

(2017) Nathan T. Evans et al.   FISHERIES

eDNA for detection of five highly invasive molluscs. A case study in urban rivers from the Iberian Peninsula

(2017) Laura Clusa et al.   PLoS One

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

First observations of Tridacna noae (Röding, 1798) (Bivalvia: Heterodonta: Cardiidae) in Christmas Island (Indian Ocean)

(2017) Mei Lin Neo et al.   Marine Biodiversity

Genetic diversity of the Acropora-associated hydrozoans: new insight from the Red Sea

(2017) Davide Maggioni et al.   Marine Biodiversity

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

Multi-locus sequence data reveal a new species of coral reef goby (Teleostei: Gobiidae:Eviota), and evidence of Pliocene vicariance across the Coral Triangle

(2016) L. Tornabene et al.   JOURNAL OF FISH BIOLOGY

Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay–Thousand Islands coral reef complex

(2016) D.F.R. Cleary et al.   MARINE POLLUTION BULLETIN

Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park

(2016) David H. Williamson et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Ecological Role of Sharks on Coral Reefs

(2016) George Roff et al.   TRENDS IN ECOLOGY & EVOLUTION

Unexpected diversity and a new species of Epizoanthus (Anthozoa, Hexacorallia) attached to eunicid worm tubes from the Pacific Ocean

(2016) Hiroki Kise et al.   ZooKeys

Sponge epizoism in the Caribbean and the discovery of new Plakortis and Haliclona species, and polymorphism of Xestospongia deweerdtae (Porifera)

(2016) JAN VICENTE et al.   ZOOTAXA

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates

(2015) Rebecca Fisher et al.   CURRENT BIOLOGY

The emergent geography of biophysical dispersal barriers across the Indo-West Pacific

(2015) Eric A. Treml et al.   DIVERSITY AND DISTRIBUTIONS

Environmental DNA sampling is more sensitive than a traditional survey technique for detecting an aquatic invader

(2015) Adam S. Smart et al.   ECOLOGICAL APPLICATIONS

Marine biodiversity and ecosystem function relationships: The potential for practical monitoring applications

(2015) James Asa Strong et al.   ESTUARINE COASTAL AND SHELF SCIENCE

DNA barcoding reveals targeted fisheries for endangered sharks in Indonesia

(2015) Andrianus Sembiring et al.   FISHERIES RESEARCH

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

(2015) Sou Fukumoto et al.   JOURNAL OF APPLIED ECOLOGY

Environmental DNA evidence of transfer of North Sea molluscs across tropical waters through ballast water

(2015) Alba Ardura et al.   JOURNAL OF MOLLUSCAN STUDIES

Mushroom corals as newly recorded hosts of the hydrozoan symbiontZancleasp.

(2015) Simone Montano et al.   Marine Biology Research

Descriptions of two azooxanthellate Palythoa species (Subclass Hexacorallia, Order Zoantharia) from the Ryukyu Archipelago, southern Japan

(2015) Yuka Irei et al.   ZooKeys

Integrating regional conservation priorities for multiple objectives into national policy

(2015) Maria Beger et al.   Nature Communications

Spatial and temporal changes in cumulative human impacts on the world’s ocean

(2015) Benjamin S. Halpern et al.   Nature Communications

Fifty years on: Lessons from marine reserves in New Zealand and principles for a worldwide network

(2014) Bill Ballantine   BIOLOGICAL CONSERVATION

Fishery Management: Contrasts in the Mediterranean and the Atlantic

(2014) Anthony D.M. Smith et al.   CURRENT BIOLOGY

Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia

(2014) Ana R. M. Polónia et al.   MICROBIAL ECOLOGY

Global conservation outcomes depend on marine protected areas with five key features

(2014) Graham J. Edgar et al.   NATURE

Interspecific, Spatial and Temporal Variability of Self-Recruitment in Anemonefishes

(2014) Hawis H. Madduppa et al.   PLoS One

The Release Rate of Environmental DNA from Juvenile and Adult Fish

(2014) Atsushi Maruyama et al.   PLoS One

Targeting Global Protected Area Expansion for Imperiled Biodiversity

(2014) Oscar Venter et al.   PLOS BIOLOGY

Importance of coastal Marine Protected Areas for the conservation of pelagic seabirds: The case of Vulnerable yelkouan shearwaters in the Mediterranean Sea

(2013) Clara Péron et al.   BIOLOGICAL CONSERVATION

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Sizing up the ecological role of sharks as predators

(2013) MR Heupel et al.   MARINE ECOLOGY PROGRESS SERIES

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Reproductive Output and Duration of the Pelagic Larval Stage Determine Seascape-Wide Connectivity of Marine Populations

(2012) Eric A. Treml et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Likely future extirpation of another Asian river dolphin: The critically endangered population of the Irrawaddy dolphin in the Mekong River is small and declining

(2012) I. Beasley et al.   MARINE MAMMAL SCIENCE

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Forever in the dark: the cave-dwelling azooxanthellate reef coral Leptoseris troglodyta sp. n. (Scleractinia, Agariciidae)

(2012) Bert Hoeksema   ZooKeys

Community-based conservation results in the recovery of reef fish spawning aggregations in the Coral Triangle

(2011) R.J. Hamilton et al.   BIOLOGICAL CONSERVATION

Connectivity and the development of population genetic structure in Indo-West Pacific coral reef communities

(2011) Johnathan T. Kool et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Connectivity dominates larval replenishment in a coastal reef fish metapopulation

(2011) P. Saenz-Agudelo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global patterns and predictors of marine biodiversity across taxa

(2010) Derek P. Tittensor et al.   NATURE

Decadal-scale rebuilding of predator biomass in Philippine marine reserves

(2010) Garry R. Russ et al.   OECOLOGIA

Highly restricted gene flow and deep evolutionary lineages in the giant clam Tridacna maxima

(2009) A. Nuryanto et al.   CORAL REEFS

Ecological specialization and population size in a biodiversity hotspot: How rare species avoid extinction

(2009) S. E. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeography and Limited Genetic Connectivity in the Endangered Boring Giant Clam across the Coral Triangle

(2008) TIMERY S. DeBOER et al.   CONSERVATION BIOLOGY

To sample or eradicate? A cost minimization model for monitoring and managing an invasive species

(2008) Tiffany L. Bogich et al.   JOURNAL OF APPLIED ECOLOGY

Strong genetic population structure in the boring giant clam,Tridacna crocea,across the Indo-Malay Archipelago: implications related to evolutionary processes and connectivity

(2008) MARC KOCHZIUS et al.   MOLECULAR ECOLOGY