Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples

(2012) Ana C. C. Pires et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Periphyton responses to nutrient and atrazine mixtures introduced through agricultural runoff

(2012) Justin N. Murdock et al.   ECOTOXICOLOGY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

‘Sponge-specific’ bacteria are widespread (but rare) in diverse marine environments

(2012) Michael W Taylor et al.   ISME Journal

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume

(2012) Brett J Baker et al.   ISME Journal

Spatial Variability in Secondary Metabolites of the Indo-Pacific Sponge Stylissa massa

(2012) Sven Rohde et al.   JOURNAL OF CHEMICAL ECOLOGY

Antibacterial Bisabolane-Type Sesquiterpenoids from the Sponge-Derived Fungus Aspergillus sp.

(2012) Dan Li et al.   Marine Drugs

Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis

(2012) Rodrigo Costa et al.   MICROBIAL ECOLOGY

Pyrosequencing Reveals Diverse and Distinct Sponge-Specific Microbial Communities in Sponges from a Single Geographical Location in Irish Waters

(2012) Stephen A. Jackson et al.   MICROBIAL ECOLOGY

Genomic insights into the marine sponge microbiome

(2012) Ute Hentschel et al.   NATURE REVIEWS MICROBIOLOGY

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis of Methylphosphonic Acid by Marine Microbes: A Source for Methane in the Aerobic Ocean

(2012) W. W. Metcalf et al.   SCIENCE

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

(2011) Angela Pitcher et al.   ISME Journal

Spotlight on the Thaumarchaeota

(2011) C Brochier-Armanet et al.   ISME Journal

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Diversity and antimicrobial activities of microbes from two Irish marine sponges, Suberites carnosus and Leucosolenia sp.

(2011) B. Flemer et al.   JOURNAL OF APPLIED MICROBIOLOGY

Complex interactions between marine sponges and their symbiotic microbial communities

(2011) Christopher J. Freeman et al.   LIMNOLOGY AND OCEANOGRAPHY

Meeting Report: 1st International Symposium on Sponge Microbiology

(2011) Michael W. Taylor et al.   MARINE BIOTECHNOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Diversity, Host-Specificity and Community Profiling of Sponge-Associated Bacteria in the Northern Gulf of Mexico

(2011) Patrick M. Erwin et al.   PLoS One

Microbial methane production in oxygenated water column of an oligotrophic lake

(2011) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment

(2011) Huiluo Cao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Anti-amoebic properties of a Malaysian marine sponge Aaptos sp. on Acanthamoeba castellanii

(2011) M. A. Nakisah et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method

(2010) H. Urakawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical and Biological Aspects of Marine Sponges of the Genus Xestospongia

(2010) Xuefeng Zhou et al.   CHEMISTRY & BIODIVERSITY

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

(2010) Pei-Yuan Qian et al.   ISME Journal

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

(2010) Alexander Siegl et al.   ISME Journal

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

(2010) Takuro Nunoura et al.   NUCLEIC ACIDS RESEARCH

Environmental Shaping of Sponge Associated Archaeal Communities

(2010) Aline S. Turque et al.   PLoS One

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

Complex nitrogen cycling in the spongeGeodia barretti

(2009) Friederike Hoffmann et al.   ENVIRONMENTAL MICROBIOLOGY

Sponge community composition in the Derawan Islands, NE Kalimantan, Indonesia

(2009) NJ de Voogd et al.   MARINE ECOLOGY PROGRESS SERIES

Pleistocene divergence of DinaricDrususendemics (Trichoptera, Limnephilidae) in multiple microrefugia within the Balkan Peninsula

(2009) ANA PREVIŠIĆ et al.   MOLECULAR ECOLOGY

Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts

(2008) S. Schmitt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex

(2008) Daniel F. R. Cleary et al.   AQUATIC SCIENCES

Diverse communities of active Bacteria and Archaea along oxygen gradients in coral reef sediments

(2008) A. Rusch et al.   CORAL REEFS

Global distribution and diversity of coral-associatedArchaeaand their possible role in the coral holobiont nitrogen cycle

(2008) Nachshon Siboni et al.   ENVIRONMENTAL MICROBIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

The functional roles of marine sponges

(2008) James J. Bell   ESTUARINE COASTAL AND SHELF SCIENCE

Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea

(2008) H. Dang et al.   MICROBIOLOGY-SGM

Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts

(2008) PATRICK M. ERWIN et al.   MOLECULAR ECOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

A korarchaeal genome reveals insights into the evolution of the Archaea

(2008) J. G. Elkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA