Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior

(2019) Jean-Baptiste Juhel et al.   Scientific Reports

Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy)

(2019) Tristan Cordier et al.   MARINE ENVIRONMENTAL RESEARCH

Coupling of palaeontological and neontological reef coral data improves forecasts of biodiversity responses under global climatic change

(2019) Lewis A. Jones et al.   Royal Society Open Science

Coral reef ecosystem functioning: eight core processes and the role of biodiversity

(2019) Simon J Brandl et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

A review on the applications and recent advances in environmental DNA (eDNA) metagenomics

(2019) Deviram Garlapati et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Artisanal fish fences pose broad and unexpected threats to the tropical coastal seascape

(2019) Dan A. Exton et al.   Nature Communications

Non‐specific amplification compromises environmental DNA metabarcoding with COI

(2019) Rupert A. Collins et al.   Methods in Ecology and Evolution

Predicting the fate of eDNA in the environment and implications for studying biodiversity

(2019) Jori B. Harrison et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs

(2018) Simon J. Brandl et al.   BIOLOGICAL REVIEWS

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity

(2018) Michal Stat et al.   CONSERVATION BIOLOGY

The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar

(2018) Salvador Lladó Fernández et al.   FOLIA MICROBIOLOGICA

Assessing nature's contributions to people

(2018) Sandra Díaz et al.   SCIENCE

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

(2018) Owen S. Wangensteen et al.   PeerJ

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

The future of hyperdiverse tropical ecosystems

(2018) Jos Barlow et al.   NATURE

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

(2018) Didier Pont et al.   Scientific Reports

Predicting the Ecological Quality Status of Marine Environments from eDNA Metabarcoding Data Using Supervised Machine Learning

(2017) Tristan Cordier et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Biodiversity effects in the wild are common and as strong as key drivers of productivity

(2017) J. Emmett Duffy et al.   NATURE

Phylogeography, population structure and evolution of coral-eating butterflyfishes (Family Chaetodontidae, genusChaetodon, subgenusCorallochaetodon)

(2016) Ellen Waldrop et al.   JOURNAL OF BIOGEOGRAPHY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Biodiversity enhances reef fish biomass and resistance to climate change

(2016) J. Emmett Duffy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Species, extinct before we know them?

(2015) Alexander C. Lees et al.   CURRENT BIOLOGY

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

(2015) Sou Fukumoto et al.   JOURNAL OF APPLIED ECOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Model selection for ecologists: the worldviews of AIC and BIC

(2014) Ken Aho et al.   ECOLOGY

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Global Biogeography of Reef Fishes: A Hierarchical Quantitative Delineation of Regions

(2013) Michel Kulbicki et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

Evidence of fishery depletions and shifting cognitive baselines in Eastern Indonesia

(2008) Cameron H. Ainsworth et al.   BIOLOGICAL CONSERVATION