Macrophage adaptation leads to parallel evolution of genetically diverse Escherichia coli small-colony variants with increased fitness in vivo and antibiotic collateral sensitivity

Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages

(2016) M. Azevedo et al.   PLoS One

Temporal variation in antibiotic environments slows down resistance evolution in pathogenicPseudomonas aeruginosa

(2015) Roderich Roemhild et al.   Evolutionary Applications

Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

(2015) Susan F. Bailey et al.   MOLECULAR ECOLOGY

Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA

(2015) Patrick R Gonzales et al.   Nature Chemical Biology

Multidrug evolutionary strategies to reverse antibiotic resistance

(2015) M. Baym et al.   SCIENCE

Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria

(2015) João Barroso-Batista et al.   Nature Communications

Triclosan-Induced Aminoglycoside-Tolerant Listeria monocytogenes Isolates Can Appear as Small-Colony Variants

(2014) Vicky G. Kastbjerg et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Experimental selection of long-term intracellular mycobacteria

(2014) Cristina L. Vázquez et al.   CELLULAR MICROBIOLOGY

Parallel evolution of small colony variants in Burkholderia cenocepacia biofilms

(2014) Vaughn S. Cooper et al.   GENOMICS

Identification of Point Mutations in Clinical Staphylococcus aureus Strains That Produce Small-Colony Variants Auxotrophic for Menadione

(2014) Melissa A. Dean et al.   INFECTION AND IMMUNITY

Strength of Selection Pressure Is an Important Parameter Contributing to the Complexity of Antibiotic Resistance Evolution

(2014) Tugce Oz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Prediction of antibiotic resistance by gene expression profiles

(2014) Shingo Suzuki et al.   Nature Communications

Rapid Evolution of Culture-Impaired Bacteria during Adaptation to Biofilm Growth

(2014) Jon Penterman et al.   Cell Reports

Microevolution of Candida albicans in Macrophages Restores Filamentation in a Nonfilamentous Mutant

(2014) Anja Wartenberg et al.   PLoS Genetics

The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps

(2014) João Barroso-Batista et al.   PLoS Genetics

Cationic Antimicrobial Peptides Promote Microbial Mutagenesis and Pathoadaptation in Chronic Infections

(2014) Dominique H. Limoli et al.   PLoS Pathogens

Bacterial evolution of antibiotic hypersensitivity

(2013) V. Lazar et al.   Molecular Systems Biology

Macrophage biology in development, homeostasis and disease

(2013) Thomas A. Wynn et al.   NATURE

Use of Collateral Sensitivity Networks to Design Drug Cycling Protocols That Avoid Resistance Development

(2013) L. Imamovic et al.   Science Translational Medicine

Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli

(2013) Matthew D. Herron et al.   PLOS BIOLOGY

The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages

(2013) Migla Miskinyte et al.   PLoS Pathogens

Increased Survival of Antibiotic-Resistant Escherichia coli inside Macrophages

(2012) Migla Miskinyte et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of three novel mechanosensitive channel activities inEscherichia coli

(2012) Michelle D. Edwards et al.   Channels

ANTIBIOTIC RESISTANCE AND STRESS IN THE LIGHT OF FISHER'S MODEL

(2012) Sandra Trindade et al.   EVOLUTION

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

(2012) JEREMY R. DETTMAN et al.   MOLECULAR ECOLOGY

Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections

(2012) C. C. Traverse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks

(2012) A. A. M. Al Mamun et al.   SCIENCE

Experimental Evolution of Legionella pneumophila in Mouse Macrophages Leads to Strains with Altered Determinants of Environmental Survival

(2012) Alexander W. Ensminger et al.   PLoS Pathogens

Staphylococcus aureusphenotype switching: an effective bacterial strategy to escape host immune response and establish a chronic infection

(2011) Lorena Tuchscherr et al.   EMBO Molecular Medicine

Phenotypic and Genome-Wide Analysis of an Antibiotic-Resistant Small Colony Variant (SCV) of Pseudomonas aeruginosa

(2011) Qing Wei et al.   PLoS One

Conversion of Commensal Escherichia coli K-12 to an Invasive Form via Expression of a Mutant Histone-Like Protein

(2011) P. Koli et al.   mBio

Adaptation in a Mouse Colony Monoassociated with Escherichia coli K-12 for More than 1,000 Days

(2010) S. M. Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms and physiological effects of protamine resistance in Salmonella enterica serovar Typhimurium LT2

(2010) Maria Pränting et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Beneficial mutations and the dynamics of adaptation in asexual populations

(2010) P. D. Sniegowski et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A role for tetrahydrofolates in the metabolism of iron-sulfur clusters in all domains of life

(2010) J. C. Waller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intracellular Activity of Antibiotics in a Model of Human THP-1 Macrophages Infected by a Staphylococcus aureus Small-Colony Variant Strain Isolated from a Cystic Fibrosis Patient: Pharmacodynamic Evaluation and Comparison with Isogenic Normal-Phenotype and Revertant Strains

(2009) H. A. Nguyen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. IV. Genetic Constraints Guide Evolutionary Trajectories in a Parallel Adaptive Radiation

(2009) M. J. McDonald et al.   GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Positive Epistasis Drives the Acquisition of Multidrug Resistance

(2009) Sandra Trindade et al.   PLoS Genetics

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH