Phylogenomics and biogeography of Cunoniaceae (Oxalidales) with complete generic sampling and taxonomic realignments

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics

(2020) Zhi Qiang Shee et al.   Frontiers in Plant Science

Fossil evidence from South America for the diversification of Cunoniaceae by the earliest Palaeocene

(2020) Nathan A Jud et al.   ANNALS OF BOTANY

Gondwanan or global? A commentary on: ‘Fossil evidence from South America for the diversification of Cunoniaceae by the earliest Palaeocene’

(2020) Raymond J Carpenter et al.   ANNALS OF BOTANY

The Gondwanan heritage of the Eocene–Miocene Patagonian floras

(2020) V.D. Barreda et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Intergeneric Relationships within the Family Salicaceae s.l. based on Plastid Phylogenomics

(2019) Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

(2019) Grace E. Brewer et al.   Frontiers in Plant Science

A phylogenomic analysis of Nepenthes (Nepenthaceae)

(2019) Bruce Murphy et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fossil flowers from the early Palaeocene of Patagonia, Argentina, with affinity to Schizomerieae (Cunoniaceae)

(2018) Nathan A Jud et al.   ANNALS OF BOTANY

TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees

(2018) Uyen Mai et al.   BMC GENOMICS

So many genes, so little time: A practical approach to divergence-time estimation in the genomic era

(2018) Stephen A. Smith et al.   PLoS One

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

The taxonomy and morphology of Schizomeria (Cunoniaceae) in New Guinea, the Moluccas and the Solomon Islands, with notes on seed dispersal and uses throughout the genus

(2018) Helen C. F. Hopkins   KEW BULLETIN

Names and types relating to the South American genus Lamanonia (Cunoniaceae) and its synonyms, the identity of L. speciosa, and an account of the little-known L. ulei

(2018) Helen C. F. Hopkins   KEW BULLETIN

The Role of Antarctica in Biogeographical Reconstruction: A Point of View

(2018) Manuel de la Estrella et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

(2018) Matthew G Johnson et al.   SYSTEMATIC BIOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights on the evolutionary origin of Detarioideae, a clade of ecologically dominant tropical African trees

(2017) Manuel de la Estrella et al.   NEW PHYTOLOGIST

Ocean Basin Evolution and Global-Scale Plate Reorganization Events Since Pangea Breakup

(2016) R. Dietmar Müller et al.   Annual Review of Earth and Planetary Sciences

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

How did the ultramafic soils shape the flora of the New Caledonian hotspot?

(2016) Sandrine Isnard et al.   PLANT AND SOIL

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

(2016) Matthew G. Johnson et al.   Applications in Plant Sciences

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico

(2015) Loubab Zedane et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

New Caledonia: a Pleistocene refugium for rain forest lineages of relict angiosperms

(2015) Robin Pouteau et al.   JOURNAL OF BIOGEOGRAPHY

Deep phylogenetic incongruence in the angiosperm clade Rosidae

(2015) Miao Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A genus-level phylogenetic linear sequence of monocots

(2015) Anna Trias-Blasi et al.   TAXON

Karrabina gen. nov. (Cunoniaceae), for the Australian species previously placed in Geissois, and a synopsis of genera in the tribe Geissoieae

(2015) H. C. F. Hopkins et al.   AUSTRALIAN SYSTEMATIC BOTANY

Paleo-Antarctic rainforest into the modern Old World tropics: The rich past and threatened future of the “southern wet forest survivors”

(2014) Robert M. Kooyman et al.   AMERICAN JOURNAL OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evolutionary Diversification of New Caledonian Araucaria

(2014) Mai Lan Kranitz et al.   PLoS One

Another Look at the Root of the Angiosperms Reveals a Familiar Tale

(2014) Bryan T. Drew et al.   SYSTEMATIC BIOLOGY

Proto-South-East Asia as a trigger of early angiosperm diversification

(2013) Sven Buerki et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

A new combination in Ackama (Cunoniaceae).

(2013) Margaret M Heslewood et al.   TELOPEA

Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography

(2012) William J. Baker et al.   JOURNAL OF BIOGEOGRAPHY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Further new endemic taxa of Cunoniaceae from New Caledonia

(2012) H. C. F. Hopkins et al.   KEW BULLETIN

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Sinopsis del género Weinmannia (Cunoniaceae) en México y Centroamérica

(2011) J. Francisco Morales   ANALES DEL JARDIN BOTANICO DE MADRID

Weinmannia marquesana var. angustifolia (Cunoniaceae), a new variety from the Marquesas Islands

(2011) David Lorence et al.   PhytoKeys

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

(2010) Thomas J. Givnish et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae

(2010) Sven Buerki et al.   JOURNAL OF BIOGEOGRAPHY

Ultramafic soils and species sorting in the flora of New Caledonia

(2010) Yohan Pillon et al.   JOURNAL OF ECOLOGY

Tropidogyne, a New Genus of Early Cretaceous Eudicots (Angiospermae) from Burmese Amber

(2010) Kenton L. Chambers et al.   NOVON

A Molecular and Morphological Survey of Generic Limits of Acsmithia and Spiraeanthemum (Cunoniaceae)

(2010) Yohan Pillon et al.   SYSTEMATIC BOTANY

The endemic genus Pancheria (Cunoniaceae) in New Caledonia: notes on morphology and the description of three new species

(2010) H. C. F. Hopkins et al.   KEW BULLETIN

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Fruits of Sloanea (Elaeocarpaceae) in the Paleogene of North America and Greenland

(2009) Steven R. Manchester et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Reticulate evolution on a mosaic of soils: diversification of the New Caledonian endemic genusCodia(Cunoniaceae)

(2009) YOHAN PILLON et al.   MOLECULAR ECOLOGY

Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae)

(2009) Sven Buerki et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rosid radiation and the rapid rise of angiosperm-dominated forests

(2009) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY