Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico

Capturing protein-coding genes across highly divergent species

(2016) Chenhong Li et al.   BIOTECHNIQUES

Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)

(2015) Guillaume Besnard et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

(2014) Arthur Kocher et al.   GENE

Sequence analysis of single-copy genes in two wild olive subspecies: nucleotide diversity and potential use for testing admixture

(2014) G. Besnard et al.   GENOME

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

(2014) Guillaume Besnard et al.   JOURNAL OF EXPERIMENTAL BOTANY

The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation

(2014) Damien D. Hinsinger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar

(2013) Guillaume Besnard et al.   ANNALS OF BOTANY

Species limits and diversification in the Madagascar olive (Noronhia, Oleaceae)

(2013) Cynthia Hong-Wa et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

ORIGIN AND DIVERSIFICATION OF THE CALIFORNIA FLORA: RE-EXAMINING CLASSIC HYPOTHESES WITH MOLECULAR PHYLOGENIES

(2013) Lesley T. Lancaster et al.   EVOLUTION

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Intricate patterns of phylogenetic relationships in the olive family as inferred from multi-locus plastid and nuclear DNA sequence analyses: A close-up on Chionanthus and Noronhia (Oleaceae)

(2013) Cynthia Hong-Wa et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

(2013) Martijn Staats et al.   PLoS One

The Phylogeny and Biogeographic History of Ashes (Fraxinus, Oleaceae) Highlight the Roles of Migration and Vicariance in the Diversification of Temperate Trees

(2013) Damien Daniel Hinsinger et al.   PLoS One

DNA Analysis of Herbarium Specimens of the Grass Weed Alopecurus myosuroides Reveals Herbicide Resistance Pre-Dated Herbicides

(2013) Christophe Délye et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deciduous Trees and the Application of Universal DNA Barcodes: A Case Study on the Circumpolar Fraxinus

(2012) Mariangela Arca et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Genomic profiling of plastid DNA variation in the Mediterranean olive tree

(2011) Guillaume Besnard et al.   BMC PLANT BIOLOGY

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Molecular phylogenetic reconstruction of Osmanthus Lour. (Oleaceae) and related genera based on three chloroplast intergenic spacers

(2011) Shi-Quan Guo et al.   PLANT SYSTEMATICS AND EVOLUTION

Plastid DNA Diversity Is Higher in the Island Endemic Guadalupe Cypress than in the Continental Tecate Cypress

(2011) Patricia Rosas Escobar et al.   PLoS One

Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison

(2010) Roberto Mariotti et al.   BMC PLANT BIOLOGY

Darwin’s Galapagos gourd: providing new insights 175 years after his visit

(2010) Patrizia Sebastian et al.   JOURNAL OF BIOGEOGRAPHY

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Herbaria are a major frontier for species discovery

(2010) D. P. Bebber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Gift from the New World? The West African Crop Cucumeropsis mannii and the American Posadaea sphaerocarpa (Cucurbitaceae) are the Same Species

(2010) Hanno Schaefer et al.   SYSTEMATIC BOTANY

Molecular phylogeny of Osmanthus (Oleaceae) based on non-coding chloroplast and nuclear ribosomal internal transcribed spacer regions

(2010) Wang-Jun YUAN et al.   Journal of Systematics and Evolution

Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: Tertiary climatic shifts and lineage differentiation times

(2009) Guillaume Besnard et al.   ANNALS OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

DNA from herbarium specimens settles a controversy about origins of the European potato

(2008) Mercedes Ames et al.   AMERICAN JOURNAL OF BOTANY

Guadalupe Island: Lost paradise recovered? Overgrazing impact on extinction in a remote oceanic island as estimated through accumulation functions

(2008) Pedro P. Garcillán et al.   BIODIVERSITY AND CONSERVATION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Diversity, invasive species and extinctions in insular ecosystems

(2008) C. Josh Donlan et al.   JOURNAL OF APPLIED ECOLOGY

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

(2008) Richard Cronn et al.   NUCLEIC ACIDS RESEARCH

Systematics of Fraxinus (Oleaceae) and evolution of dioecy

(2008) Eva Wallander   PLANT SYSTEMATICS AND EVOLUTION

Species invasions and extinction: The future of native biodiversity on islands

(2008) D. F. Sax et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY