Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria

High-throughput cultivation of heterotrophic bacteria during a spring phytoplankton bloom in the North Sea

(2020) Carlota Alejandre-Colomo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Seasonal Variation of Bacterial Diversity Along the Marine Particulate Matter Continuum

(2020) Mireia Mestre et al.   Frontiers in Microbiology

Biopearling of interconnected outer membrane vesicle chains by a marine flavobacterium

(2019) Tanja Fischer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes

(2019) Karen Krüger et al.   ISME Journal

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans

(2018) Lennart Kappelmann et al.   ISME Journal

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae

(2018) T. Ben Francis et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Recurrent patterns of microdiversity in a temperate coastal marine environment

(2017) Meghan Chafee et al.   ISME Journal

Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum

(2017) Mireia Mestre et al.   MOLECULAR ECOLOGY

Surface properties of SAR11 bacteria facilitate grazing avoidance

(2017) Ayelet Dadon-Pilosof et al.   Nature Microbiology

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

(2017) Justin R. Seymour et al.   Nature Microbiology

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Aurantivirga profunda gen. nov., sp. nov., isolated from deep-seawater, a novel member of the family Flavobacteriaceae

(2015) Jaeho Song et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

RESPIRE: An in situ particle interceptor to conduct particle remineralization and microbial dynamics studies in the oceans’ Twilight Zone

(2015) Philip W. Boyd et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The oceanographic toolbox for the collection of sinking and suspended marine particles

(2015) Andrew M.P. McDonnell et al.   PROGRESS IN OCEANOGRAPHY

Zooplankton fecal pellets, marine snow, phytodetritus and the ocean’s biological pump

(2015) Jefferson T. Turner   PROGRESS IN OCEANOGRAPHY

Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea

(2015) Angelika Rieck et al.   Frontiers in Microbiology

Standard filtration practices may significantly distort planktonic microbial diversity estimates

(2015) Cory C. Padilla et al.   Frontiers in Microbiology

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization

(2014) Mina Bižić-Ionescu et al.   ENVIRONMENTAL MICROBIOLOGY

Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison

(2014) Lindsay D'Ambrosio et al.   ISME Journal

Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations

(2014) Y. Yawata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem

(2013) Maria W. Smith et al.   Frontiers in Microbiology

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Abundance and Single-Cell Activity of Heterotrophic Bacterial Groups in the Western Arctic Ocean in Summer and Winter

(2012) Mrinalini P. Nikrad et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Polaribacter reichenbachii sp. nov.: A New Marine Bacterium Associated with the Green Alga Ulva fenestrata

(2012) Olga I. Nedashkovskaya et al.   CURRENT MICROBIOLOGY

An approach for particle sinking velocity measurements in the 3–400 μm size range and considerations on the effect of temperature on sinking rates

(2012) Lennart Thomas Bach et al.   MARINE BIOLOGY

Ecology and Physics of Bacterial Chemotaxis in the Ocean

(2012) Roman Stocker et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone

(2011) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Metabolism of free-living and particle-associated prokaryotes: Consequences for carbon flux around a Southern Ocean archipelago

(2011) Mathilde Schapira et al.   JOURNAL OF MARINE SYSTEMS

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Complete Genome Sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a Representative of the SAR116 Clade in the Alphaproteobacteria

(2010) H.-M. Oh et al.   JOURNAL OF BACTERIOLOGY

Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed

(2010) Hans-Peter Grossart   Environmental Microbiology Reports

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment

(2010) Emiley A. Eloe et al.   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Atomic force microscopy reveals microscale networks and possible symbioses among pelagic marine bacteria

(2009) F Malfatti et al.   AQUATIC MICROBIAL ECOLOGY

Escaping RGBland: Selecting colors for statistical graphics

(2009) Achim Zeileis et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Polysaccharide hydrolysis in aggregates and free enzyme activity in aggregate-free seawater from the north-eastern Gulf of Mexico

(2008) Kai Ziervogel et al.   ENVIRONMENTAL MICROBIOLOGY

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE