Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans

SusE facilitates starch uptake independent of starch binding in B. thetaiotaomicron

(2018) Matthew H. Foley et al.   MOLECULAR MICROBIOLOGY

Sulfated Alginates as Heparin Analogues: A Review of Chemical and Functional Properties

(2017) Øystein Arlov et al.   MOLECULES

Structural basis for nutrient acquisition by dominant members of the human gut microbiota

(2017) Amy J. Glenwright et al.   NATURE

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

(2017) Elizabeth Ficko-Blean et al.   Nature Communications

Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides

(2017) Kazune Tamura et al.   Cell Reports

New structural insights into the cell-wall polysaccharide of the diatom Phaeodactylum tricornutum

(2017) Tinaïg Le Costaouëc et al.   Algal Research-Biomass Biofuels and Bioproducts

Learning from microbial strategies for polysaccharide degradation

(2016) G. R. Hemsworth et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT

(2016) Tristan Barbeyron et al.   ENVIRONMENTAL MICROBIOLOGY

Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III fromBacteroides thetaiotaomicron(BT4657)

(2016) ThirumalaiSelvi Ulaganathan et al.   GLYCOBIOLOGY

Mannitol biosynthesis in algae: more widespread and diverse than previously thought

(2016) Thierry Tonon et al.   NEW PHYTOLOGIST

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity

(2016) Tristan Barbeyron et al.   PLoS One

Structural Study of Sulfated Fuco-Oligosaccharide Branched Glucuronomannan fromKjellmaniella crassifoliaby ESI-CID-MS/MS

(2015) Jiandong Wu et al.   JOURNAL OF CARBOHYDRATE CHEMISTRY

Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

(2015) Bruno Gügi et al.   Marine Drugs

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

The Mannitol Utilization System of the Marine Bacterium Zobellia galactanivorans

(2014) Agnès Groisillier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Heparin-Like Properties of Sulfated Alginates with Defined Sequences and Sulfation Degrees

(2014) Øystein Arlov et al.   BIOMACROMOLECULES

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea

(2014) Richard L. Hahnke et al.   ENVIRONMENTAL MICROBIOLOGY

Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom

(2014) Peng Xing et al.   ISME Journal

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

(2014) T.B.K. Reddy et al.   NUCLEIC ACIDS RESEARCH

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides

(2013) Alexander J. Mann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The β-GlucanaseZgLamA fromZobellia galactanivoransEvolved a Bent Active Site Adapted for Efficient Degradation of Algal Laminarin

(2013) Aurore Labourel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic diversity of Flavobacteria isolated from the North Sea on solid media

(2013) Richard L. Hahnke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Chondrocyte Culture in Three Dimensional Alginate Sulfate Hydrogels Promotes Proliferation While Maintaining Expression of Chondrogenic Markers

(2013) Rami Mhanna et al.   TISSUE ENGINEERING PART A

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants

(2011) Zoë A. Popper et al.   Annual Review of Plant Biology

New microbial mannan catabolic pathway that involves a novel mannosylglucose phosphorylase

(2011) Takeshi Senoura et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Important Determinants for Fucoidan Bioactivity: A Critical Review of Structure-Function Relations and Extraction Methods for Fucose-Containing Sulfated Polysaccharides from Brown Seaweeds

(2011) Marcel Tutor Ale et al.   Marine Drugs

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2011) N. D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The charophycean green algae provide insights into the early origins of plant cell walls

(2011) Iben Sørensen et al.   PLANT JOURNAL

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

(2011) Eric C. Martens et al.   PLOS BIOLOGY

Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins

(2010) Ying Zhang et al.   ANALYTICAL CHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus

(2010) Antoine Gravot et al.   NEW PHYTOLOGIST

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The family 6 carbohydrate-binding modules have coevolved with their appended catalytic modules toward similar substrate specificity

(2009) Gurvan Michel et al.   GLYCOBIOLOGY

An overview of mannan structure and mannan-degrading enzyme systems

(2008) L. R. S. Moreira et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Structural and Functional Analysis of a Glycoside Hydrolase Family 97 Enzyme fromBacteroides thetaiotaomicron

(2008) Momoyo Kitamura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fucoidan: Structure and Bioactivity

(2008) Bo Li et al.   MOLECULES