Epiphytic Diatom-Based Biomonitoring in Mediterranean Ponds: Traditional Microscopy versus Metabarcoding Approaches

Benthic Diatoms in River Biomonitoring—Present and Future Perspectives within the Water Framework Directive

(2021) Andreas Masouras et al.   Water

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers

(2020) Javier Pérez-Burillo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A taxonomy-free approach based on machine learning to assess the quality of rivers with diatoms

(2020) Maria João Feio et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative study on diatom morphology and molecular identification in drowning cases

(2020) Mengyan Liu et al.   FORENSIC SCIENCE INTERNATIONAL

Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index

(2020) Laure Apothéloz‐Perret‐Gentil et al.   MOLECULAR ECOLOGY

Are dead stems suitable substrata for diatom-based monitoring in Mediterranean shallow ponds?

(2019) María Borrego-Ramos et al.   Fundamental and Applied Limnology

Connecting the morphological and molecular species concepts to facilitate species identification within the genus Fragilaria (Bacillariophyta)

(2019) Maria Kahlert et al.   JOURNAL OF PHYCOLOGY

Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms

(2019) Andreia Mortágua et al.   ECOLOGICAL INDICATORS

Diat.barcode, an open-access curated barcode library for diatoms

(2019) Frédéric Rimet et al.   Scientific Reports

Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities

(2019) Kálmán Tapolczai et al.   Frontiers in Ecology and Evolution

Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software

(2019) Sinziana F. Rivera et al.   ECOLOGICAL INDICATORS

The potential of High-Throughput Sequencing (HTS) of natural samples as a source of primary taxonomic information for reference libraries of diatom barcodes

(2018) Frederic Rimet et al.   Fottea

Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units’ ecological profiles

(2018) François Keck et al.   Molecular Ecology Resources

Development of a diatom-based multimetric index for acid mine drainage impacted depressional wetlands

(2018) Luisa Riato et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

Molecular and morphological characterization of the Achnanthidium minutissimum complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of A. digitatum sp. nov.

(2017) Eveline Pinseel et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

(2017) S. F. Rivera et al.   HYDROBIOLOGIA

Identification of benthic diatoms isolated from the eastern tidal flats of the Yellow Sea: Comparison between morphological and molecular approaches

(2017) Sung Min An et al.   PLoS One

The structure and diversity of freshwater diatom assemblages from Franz Josef Land Archipelago: a northern outpost for freshwater diatoms

(2016) Sergi Pla-Rabés et al.   PeerJ

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

(2014) Jonas Zimmermann et al.   Molecular Ecology Resources

Does the Cosmopolitan Diatom Gomphonema parvulum (Kützing) Kützing Have a Biogeography?

(2014) Nelida Abarca et al.   PLoS One

Assessment of ecological status in UK lakes using benthic diatoms

(2014) Helen Bennion et al.   Freshwater Science

Epiphytic Diatoms along Environmental Gradients in Western European Shallow Lakes

(2013) Saúl Blanco et al.   CLEAN-Soil Air Water

Morphological and molecular phylogenetic studies onFistulifera saprophila

(2013) Aleksandra Zgrundo et al.   DIATOM RESEARCH

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kützing) Kützing Complex (Bacillariophyta)

(2013) Lenaïg Kermarrec et al.   PROTIST

The influence of substrates and physicochemical factors on the composition of diatom assemblages in karst springs and their applicability in water-quality assessment

(2012) Agata Z. Wojtal et al.   HYDROBIOLOGIA

Nitrogen, macrophytes, shallow lakes and nutrient limitation: resolution of a current controversy?

(2012) Brian Moss et al.   HYDROBIOLOGIA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Epiphytic diatoms and water quality in shallow lakes: the neutral substrate hypothesis revisited

(2011) Cristina Cejudo-Figueiras et al.   MARINE AND FRESHWATER RESEARCH

The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)

(2010) Rosa Trobajo et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Pseudocryptic Diversity versus Cosmopolitanism in Diatoms: a Case Study on Navicula cryptocephala Kütz. (Bacillariophyceae) and Morphologically Similar Taxa

(2010) Aloisie Poulíčková et al.   PROTIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of environmental variables in structuring epiphytic and epilithic diatom assemblages in springs and streams of the Dolomiti Bellunesi National Park (south-eastern Alps)

(2009) Marco Cantonati et al.   Fundamental and Applied Limnology

Water pollution by agriculture

(2007) B. Moss   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES