Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro

The protein and microRNA cargo of extracellular vesicles from parasitic helminths – current status and research priorities

(2020) Javier Sotillo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Extracellular non-coding RNA signatures of the metacestode stage of Echinococcus multilocularis

(2020) María Eugenia Ancarola et al.   PLoS Neglected Tropical Diseases

Identification and expression profiling of microRNAs in Hymenolepis

(2019) Natalia Macchiaroli et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The role of fibroblast growth factor signalling in Echinococcus multilocularis development and host-parasite interaction

(2019) Sabine Förster et al.   PLoS Neglected Tropical Diseases

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Schistosoma japonicum extracellular vesicle miRNA cargo regulates host macrophage functions facilitating parasitism

(2019) Juntao Liu et al.   PLoS Pathogens

Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo

(2019) Juan F. Quintana et al.   PLoS Neglected Tropical Diseases

Parasite-derived microRNAs in plasma as novel promising biomarkers for the early detection of hydatid cyst infection and post-surgery follow-up

(2019) Zahra Alizadeh et al.   ACTA TROPICA

Deciphering the role of miR-71 in Echinococcus multilocularis early development in vitro

(2019) Matías Gastón Pérez et al.   PLoS Neglected Tropical Diseases

Metazoan MicroRNAs

(2018) David P. Bartel   CELL

Vesicle-based secretion in schistosomes: Analysis of protein and microRNA (miRNA) content of exosome-like vesicles derived from Schistosoma mansoni

(2018) Vitalie Samoil et al.   Scientific Reports

Evolutionary developmental biology (evo-devo) of cestodes

(2017) Uriel Koziol   EXPERIMENTAL PARASITOLOGY

Suppression of nemo-like kinase by miR-71 in Echinococcus multilocularis

(2017) Xiaola Guo et al.   EXPERIMENTAL PARASITOLOGY

microRNA analysis of Taenia crassiceps cysticerci under praziquantel treatment and genome-wide identification of Taenia solium miRNAs

(2017) Matías Gastón Pérez et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Cestode parasites release extracellular vesicles with microRNAs and immunodiagnostic protein cargo

(2017) María Eugenia Ancarola et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

WormBase ParaSite − a comprehensive resource for helminth genomics

(2017) Kevin L. Howe et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni

(2017) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

Comparative analysis of Wnt expression identifies a highly conserved developmental transition in flatworms

(2016) Uriel Koziol et al.   BMC BIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification and profiling of microRNAs in two developmental stages of the model cestode parasite Mesocestoides corti

(2016) Tatiana Basika et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

MicroRNAs in Parasitic Helminthiases: Current Status and Future Perspectives

(2016) Pengfei Cai et al.   TRENDS IN PARASITOLOGY

MicroRNAs Are Involved in the Regulation of Ovary Development in the Pathogenic Blood Fluke Schistosoma japonicum

(2016) Lihui Zhu et al.   PLoS Pathogens

High-throughput characterization of Echinococcus spp. metacestode miRNomes

(2015) Marcela Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach

(2015) Natalia Macchiaroli et al.   Parasites & Vectors

Host insulin stimulates Echinococcus multilocularis insulin signalling pathways and larval development

(2014) Sarah Hemer et al.   BMC BIOLOGY

Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus

(2014) Yun Bai et al.   BMC GENOMICS

The unique stem cell sysem of the immortal larva of the human parasite Echinococcus multilocularis

(2014) Uriel Koziol et al.   EvoDevo

EmTIP, a T-Cell Immunomodulatory Protein Secreted by the Tapeworm Echinococcus multilocularis Is Important for Early Metacestode Development

(2014) Justin Komguep Nono et al.   PLoS Neglected Tropical Diseases

microRNAs of parasitic helminths – Identification, characterization and potential as drug targets

(2014) Collette Britton et al.   International Journal for Parasitology-Drugs and Drug Resistance

Anatomy and development of the larval nervous system in Echinococcus multilocularis

(2013) Uriel Koziol et al.   Frontiers in Zoology

MicroRNA-281 regulates the expression of ecdysone receptor (EcR) isoform B in the silkworm, Bombyx mori

(2013) Jianhao Jiang et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The nervous and prenervous roles of serotonin in Echinococcus spp.

(2013) F. Camicia et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Substantial Loss of Conserved and Gain of Novel MicroRNA Families in Flatworms

(2013) Bastian Fromm et al.   MOLECULAR BIOLOGY AND EVOLUTION

miRNAs: Small Genes with Big Potential in Metazoan Phylogenetics

(2013) James E. Tarver et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

DrosophilamiR-277 controls branched-chain amino acid catabolism and affects lifespan

(2013) Stephanie Maria Esslinger et al.   RNA Biology

Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea

(2013) V. Sasidharan et al.   RNA

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni

(2013) Antonio Marco et al.   PLoS Neglected Tropical Diseases

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

(2012) Alan D Winter et al.   BMC GENOMICS

The C. elegans MicroRNA mir-71 Acts in Neurons to Promote Germline-Mediated Longevity through Regulation of DAF-16/FOXO

(2012) Konstantinos Boulias et al.   Cell Metabolism

Small temporal RNAs in animal development

(2012) Nicholas S Sokol   CURRENT OPINION IN GENETICS & DEVELOPMENT

MicroRNAs in parasitic diseases: Potential for diagnosis and targeting

(2012) Raúl Manzano-Román et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The MicroRNA mir-71 Inhibits Calcium Signaling by Targeting the TIR-1/Sarm1 Adaptor Protein to Control Stochastic L/R Neuronal Asymmetry in C. elegans

(2012) Yi-Wen Hsieh et al.   PLoS Genetics

Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila

(2011) Sergei S Ryazansky et al.   BMC GENOMICS

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

(2011) J. Wang et al.   GENOME RESEARCH

Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni

(2011) Matheus de Souza Gomes et al.   GENOMICS

Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes

(2011) M. Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

microRNAs play critical roles in the survival and recovery of Caenorhabditis elegans from starvation-induced L1 diapause

(2011) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The miR-10 microRNA precursor family

(2011) Disa Tehler et al.   RNA Biology

MicroRNA-9

(2011) Yeliz Yuva-Aydemir et al.   RNA Biology

Profiles of Small Non-Coding RNAs in Schistosoma japonicum during Development

(2011) Pengfei Cai et al.   PLoS Neglected Tropical Diseases

Modifications of Small RNAs and Their Associated Proteins

(2010) Young-Kook Kim et al.   CELL

Clinical features and treatment of alveolar echinococcosis

(2010) Peter Kern   CURRENT OPINION IN INFECTIOUS DISEASES

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

miR-10 in development and cancer

(2009) A H Lund   CELL DEATH AND DIFFERENTIATION

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Repertoire and evolution of miRNA genes in four divergent nematode species

(2009) E. de Wit et al.   GENOME RESEARCH

Molecular characterisation of MEK1/2- and MKK3/6-like mitogen-activated protein kinase kinases (MAPKK) from the fox tapeworm Echinococcus multilocularis

(2009) Verena Gelmedin et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

High-resolution profiling and discovery of planarian small RNAs

(2009) Marc R. Friedländer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea

(2009) Y.-C. Lu et al.   RNA

Evaluation of Echinococcus multilocularis tetraspanins as vaccine candidates against primary alveolar echinococcosis

(2009) Zhisheng Dang et al.   VACCINE

Echinococcus multilocularis: The parasite–host interplay

(2008) Bruno Gottstein et al.   EXPERIMENTAL PARASITOLOGY

Transient transfection of Echinococcus multilocularis primary cells and complete in vitro regeneration of metacestode vesicles

(2007) Markus Spiliotis et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY