Extracellular non-coding RNA signatures of the metacestode stage of Echinococcus multilocularis

The protein and microRNA cargo of extracellular vesicles from parasitic helminths – current status and research priorities

(2020) Javier Sotillo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Trichinella spiralis secretes abundant unencapsulated small RNAs with potential effects on host gene expression

(2020) Peter J. Taylor et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Extracellular vesicles from Echinococcus granulosus larval stage: Isolation, characterization and uptake by dendritic cells

(2019) María Celeste Nicolao et al.   PLoS Neglected Tropical Diseases

Identification and molecular characterization of exosome-like vesicles derived from the Taenia asiatica adult worm

(2019) Panhong Liang et al.   ACTA TROPICA

In vivo assembly of eukaryotic signal recognition particle: A still enigmatic process involving the SMN complex

(2019) Séverine Massenet   BIOCHIMIE

miRNA-seq of Echinococcus multilocularis Extracellular Vesicles and Immunomodulatory Effects of miR-4989

(2019) Juntao Ding et al.   Frontiers in Microbiology

Extracellular vesicles derived from Echinococcus granulosus hydatid cyst fluid from patients: isolation, characterization and evaluation of immunomodulatory functions on T cells

(2019) Xiaojing Zhou et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Metazoan MicroRNAs

(2018) David P. Bartel   CELL

Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs

(2018) Juan Pablo Tosar et al.   NUCLEIC ACIDS RESEARCH

Selective Export into Extracellular Vesicles and Function of tRNA Fragments during T Cell Activation

(2018) Ni-Ting Chiou et al.   Cell Reports

Cestode parasites release extracellular vesicles with microRNAs and immunodiagnostic protein cargo

(2017) María Eugenia Ancarola et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Expression profiling of circulating miRNAs in mouse serum in response to Echinococcus multilocularis infection

(2017) XIAOLA GUO et al.   PARASITOLOGY

tRNA-derived small RNAs: New players in genome protection against retrotransposons

(2017) German Martinez   RNA Biology

Isolation and characterization of exosomes derived from fertile sheep hydatid cysts

(2017) Mar Siles-Lucas et al.   VETERINARY PARASITOLOGY

Regulatory effects of Echinococcus multilocularis extracellular vesicles on RAW264.7 macrophages

(2017) Yadong Zheng et al.   VETERINARY PARASITOLOGY

Coding and noncoding landscape of extracellular RNA released by human glioma stem cells

(2017) Zhiyun Wei et al.   Nature Communications

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

MicroRNA-125a-5p Contributes to Hepatic Stellate Cell Activation through Targeting FIH1

(2016) Guojun Li et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Excretory/secretory products in the Echinococcus granulosus metacestode: is the intermediate host complacent with infection caused by the larval form of the parasite?

(2016) Guilherme B. dos Santos et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Fetal Bovine Serum RNA Interferes with the Cell Culture derived Extracellular RNA

(2016) Zhiyun Wei et al.   Scientific Reports

High-throughput characterization of Echinococcus spp. metacestode miRNomes

(2015) Marcela Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Assessment of small RNA sorting into different extracellular fractions revealed by high-throughput sequencing of breast cell lines

(2015) J. P. Tosar et al.   NUCLEIC ACIDS RESEARCH

Extracellular Onchocerca-derived small RNAs in host nodules and blood

(2015) Juan F Quintana et al.   Parasites & Vectors

microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach

(2015) Natalia Macchiaroli et al.   Parasites & Vectors

Application of small RNA technology for improved control of parasitic helminths

(2015) Collette Britton et al.   VETERINARY PARASITOLOGY

Differential and coherent processing patterns from small RNAs

(2015) Sachin Pundhir et al.   Scientific Reports

Release of Small RNA-containing Exosome-like Vesicles from the Human Filarial Parasite Brugia malayi

(2015) Mostafa Zamanian et al.   PLoS Neglected Tropical Diseases

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Surface analysis of Dicrocoelium dendriticum. The molecular characterization of exosomes reveals the presence of miRNAs

(2014) Dolores Bernal et al.   Journal of Proteomics

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

(2014) Amy H. Buck et al.   Nature Communications

The unique stem cell sysem of the immortal larva of the human parasite Echinococcus multilocularis

(2014) Uriel Koziol et al.   EvoDevo

Parasite-Derived MicroRNAs in Host Serum As Novel Biomarkers of Helminth Infection

(2014) Anna M. Hoy et al.   PLoS Neglected Tropical Diseases

An SREBP-Responsive microRNA Operon Contributes to a Regulatory Loop for Intracellular Lipid Homeostasis

(2013) Tae-Il Jeon et al.   Cell Metabolism

MicroRNAs 185, 96, and 223 Repress Selective High-Density Lipoprotein Cholesterol Uptake through Posttranscriptional Inhibition

(2013) L. Wang et al.   MOLECULAR AND CELLULAR BIOLOGY

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Biases in small RNA deep sequencing data

(2013) Carsten A. Raabe et al.   NUCLEIC ACIDS RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes

(2011) M. Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins

(2011) Kasey C. Vickers et al.   NATURE CELL BIOLOGY

Characterization of extracellular circulating microRNA

(2011) Andrey Turchinovich et al.   NUCLEIC ACIDS RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma

(2011) J. D. Arroyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding the laminated layer of larval Echinococcus I: structure

(2011) Alvaro Díaz et al.   TRENDS IN PARASITOLOGY

Export of microRNAs and microRNA-protective protein by mammalian cells

(2010) Kai Wang et al.   NUCLEIC ACIDS RESEARCH

Expert consensus for the diagnosis and treatment of cystic and alveolar echinococcosis in humans

(2009) Enrico Brunetti et al.   ACTA TROPICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY