Toxic Y chromosome: Increased repeat expression and age-associated heterochromatin loss in male Drosophila with a young Y chromosome

The sex with the reduced sex chromosome dies earlier: a comparison across the tree of life

(2020) Zoe A. Xirocostas et al.   Biology Letters

Integrating transposable elements in the 3D genome

(2020) Alexandros Bousios et al.   Mobile DNA

The Drosophila Y chromosome affects heterochromatin integrity genome-wide

(2020) Emily J Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

L1 drives IFN in senescent cells and promotes age-associated inflammation

(2019) Marco De Cecco et al.   NATURE

Social behavior and aging: A fly model

(2019) Dova B. Brenman‐Suttner et al.   GENES BRAIN AND BEHAVIOR

Host–transposon interactions: conflict, cooperation, and cooption

(2019) Rachel L Cosby et al.   GENES & DEVELOPMENT

Dynamic turnover of centromeres drives karyotype evolution in Drosophila

(2019) Ryan Bracewell et al.   eLife

RNA from a simple-tandem repeat is required for sperm maturation and male fertility in Drosophila melanogaster

(2019) Wilbur Kyle Mills et al.   eLife

Massive gene amplification on a recently formed Drosophila Y chromosome

(2019) Doris Bachtrog et al.   Nature Ecology & Evolution

Sex differences in life history, behavior, and physiology along a slow-fast continuum: a meta-analysis

(2018) Maja Tarka et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny

(2018) Kevin H -C Wei et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive exchange of transposable elements in the Drosophila pseudoobscura group

(2018) Tom Hill et al.   Mobile DNA

Sex gap in aging and longevity: can sex chromosomes play a role?

(2018) Gabriel A.B. Marais et al.   Biology of Sex Differences

Chromatin Architectural Changes during Cellular Senescence and Aging

(2018) Luyang Sun et al.   Genes

De novo assembly of a young Drosophila Y chromosome using single-molecule sequencing and chromatin conformation capture

(2018) Shivani Mahajan et al.   PLOS BIOLOGY

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

(2018) Ching-Ho Chang et al.   GENETICS

Ten principles of heterochromatin formation and function

(2017) Robin C. Allshire et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Hide and seek: how chromatin-based pathways silence retroelements in the mammalian germline

(2016) Antoine Molaro et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Chromatin-modifying genetic interventions suppress age-associated transposable element activation and extend life span inDrosophila

(2016) Jason G. Wood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

(2015) Ying Jin et al.   BIOINFORMATICS

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

(2015) Clément Goubert et al.   Genome Biology and Evolution

The Release 6 reference sequence of theDrosophila melanogastergenome

(2015) Roger A. Hoskins et al.   GENOME RESEARCH

‘Satellite DNA transcripts have diverse biological roles in Drosophila’

(2015) G C S Kuhn   HEREDITY

The genetic sex-determination system predicts adult sex ratios in tetrapods

(2015) Ivett Pipoly et al.   NATURE

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations

(2015) Julie Brind’Amour et al.   Nature Communications

Age-Associated Loss of Lamin-B Leads to Systemic Inflammation and Gut Hyperplasia

(2014) Haiyang Chen et al.   CELL

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization

(2014) N. Bonhoure et al.   GENOME RESEARCH

Tau promotes neurodegeneration through global chromatin relaxation

(2014) Bess Frost et al.   NATURE NEUROSCIENCE

SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age

(2014) Michael Van Meter et al.   Nature Communications

Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements

(2013) Marco De Cecco et al.   AGING CELL

Evolution of sex differences in lifespan and aging: Causes and constraints

(2013) Alexei A. Maklakov et al.   BIOESSAYS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Activation of transposable elements during aging and neuronal decline in Drosophila

(2013) Wanhe Li et al.   NATURE NEUROSCIENCE

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Dosage Compensation via Transposable Element Mediated Rewiring of a Regulatory Network

(2013) C. E. Ellison et al.   SCIENCE

The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation

(2013) Qi Zhou et al.   PLOS BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

The great unravelling: chromatin as a modulator of the aging process

(2012) Roderick J. O'Sullivan et al.   TRENDS IN BIOCHEMICAL SCIENCES

Heterochromatin Formation Promotes Longevity and Represses Ribosomal RNA Synthesis

(2012) Kimberly Larson et al.   PLoS Genetics

Selfish genetic elements, genetic conflict, and evolutionary innovation

(2011) J. H. Werren   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin remodeling in the aging genome of Drosophila

(2010) Jason G. Wood et al.   AGING CELL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Repetitive elements and genome instability

(2010) Zoltán Ivics et al.   SEMINARS IN CANCER BIOLOGY

Molecular Landscape of Modified Histones in Drosophila Heterochromatic Genes and Euchromatin-Heterochromatin Transition Zones

(2008) Jiro C. Yasuhara et al.   PLoS Genetics

Genomic degradation of a young Y chromosome in Drosophila miranda

(2008) Doris Bachtrog et al.   GENOME BIOLOGY