Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

Dosage Compensation and Demasculinization of X Chromosomes in Drosophila

(2010) Doris Bachtrog et al.   CURRENT BIOLOGY

Validation of Rearrangement Break Points Identified by Paired-End Sequencing in Natural Populations of Drosophila melanogaster

(2010) Julie M. Cridland et al.   Genome Biology and Evolution

Age-dependent chromosomal distribution of male-biased genes in Drosophila

(2010) Y. E. Zhang et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

The Sexually Antagonistic Genes of Drosophila melanogaster

(2010) Paolo Innocenti et al.   PLOS BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Patterns of DNA-Sequence Divergence Between Drosophila miranda and D. pseudoobscura

(2009) Sophie Marion de Procé et al.   JOURNAL OF MOLECULAR EVOLUTION

Accelerated Adaptive Evolution on a Newly Formed X Chromosome

(2009) Doris Bachtrog et al.   PLOS BIOLOGY

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes

(2008) A. Bhutkar et al.   GENETICS

Evidence for Male-Driven Evolution in Drosophila

(2008) D. Bachtrog   MOLECULAR BIOLOGY AND EVOLUTION

Low conservation of gene content in the Drosophila Y chromosome

(2008) Leonardo B. Koerich et al.   NATURE

Evolution of protein-coding genes in Drosophila

(2008) Amanda M. Larracuente et al.   TRENDS IN GENETICS

Genomic degradation of a young Y chromosome in Drosophila miranda

(2008) Doris Bachtrog et al.   GENOME BIOLOGY