De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

Tedna: a transposable element de novo assembler

(2014) Matthias Zytnicki et al.   BIOINFORMATICS

Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites

(2014) Dan Zhou et al.   BMC GENOMICS

Human-aided and natural dispersal drive gene flow across the range of an invasive mosquito

(2014) Kim A. Medley et al.   MOLECULAR ECOLOGY

RepARK—de novo creation of repeat libraries from whole-genome NGS reads

(2014) Philipp Koch et al.   NUCLEIC ACIDS RESEARCH

A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids

(2014) Doris Vela et al.   PLoS One

Distinguishing ecological from evolutionary approaches to transposable elements

(2013) Stefan Linquist et al.   BIOLOGICAL REVIEWS

HUMAN IMPACTS HAVE SHAPED HISTORICAL AND RECENT EVOLUTION INAEDES AEGYPTI, THE DENGUE AND YELLOW FEVER MOSQUITO

(2013) Julia E. Brown et al.   EVOLUTION

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

The Genome of Anopheles darlingi , the main neotropical malaria vector

(2013) Osvaldo Marinotti et al.   NUCLEIC ACIDS RESEARCH

The invasive mosquito species Aedes albopictus: current knowledge and future perspectives

(2013) Mariangela Bonizzoni et al.   TRENDS IN PARASITOLOGY

The impact of transposable elements on eukaryotic genomes: From genome size increase to genetic adaptation to stressful environments

(2012) Benoît Chénais et al.   GENE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

(2012) S. Evan Staton et al.   PLANT JOURNAL

LINE-1 Elements in Structural Variation and Disease

(2011) Christine R. Beck et al.   Annual Review of Genomics and Human Genetics

Families of transposable elements, population structure and the origin of species

(2011) Jerzy Jurka et al.   Biology Direct

The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

(2011) Peter Arensburger et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Jumping genes and epigenetics: Towards new species

(2010) Rita Rebollo et al.   GENE

Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes

(2010) Emmanuelle Lerat et al.   GENE

Dispersal and Survival of Aedes albopictus (Diptera: Culicidae) Males in Italian Urban Areas and Significance for Sterile Insect Technique Application

(2010) Romeo Bellini et al.   JOURNAL OF MEDICAL ENTOMOLOGY

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Dynamics of transposable elements: towards a community ecology of the genome

(2009) Samuel Venner et al.   TRENDS IN GENETICS

Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

(2008) John L. Goodier et al.   CELL

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH