Metabarcoding analysis of gut microbiota of healthy individuals reveals impact of probiotic and maltodextrin consumption

A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

(2020) Jinshui Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Reduced anti-inflammatory gut microbiota are associated with depression and anhedonia

(2020) Brittany L. Mason et al.   JOURNAL OF AFFECTIVE DISORDERS

Probiotic Supplementation Improves Cognitive Function and Mood with Changes in Gut Microbiota in Community-Dwelling Older Adults: A Randomized, Double-Blind, Placebo-Controlled, Multicenter Trial

(2020) Chong-Su Kim et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

Gut Microbiota Dysbiosis Associated With Altered Production of Short Chain Fatty Acids in Children With Neurodevelopmental Disorders

(2020) Katarina Bojović et al.   Frontiers in Cellular and Infection Microbiology

Microbial and metabolomic profiles in correlation with depression and anxiety co-morbidities in diarrhoea-predominant IBS patients

(2020) Tong Liu et al.   BMC MICROBIOLOGY

Altered Composition of Gut Microbiota in Depression: A Systematic Review

(2020) Zahra Amirkhanzadeh Barandouzi et al.   Frontiers in Psychiatry

Metagenomic analysis of the gut microbiome in atherosclerosis patients identify cross‐cohort microbial signatures and potential therapeutic target

(2020) Sheng Liu et al.   FASEB JOURNAL

From isoniazid to psychobiotics: the gut microbiome as a new antidepressant target

(2019) Mary I Butler et al.   BRITISH JOURNAL OF HOSPITAL MEDICINE

Systematic Review of Gut Microbiota and Major Depression

(2019) Stephanie G. Cheung et al.   Frontiers in Psychiatry

Effects of Probiotics on Cognitive Reactivity, Mood, and Sleep Quality

(2019) Angela Marotta et al.   Frontiers in Psychiatry

Stereotypes About Enterotype: the Old and New Ideas

(2019) Mingyue Cheng et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Gut feelings: A randomised, triple-blind, placebo-controlled trial of probiotics for depressive symptoms

(2019) Bahia Chahwan et al.   JOURNAL OF AFFECTIVE DISORDERS

A prospective randomized, double-blind, placebo-controlled, dose-response relationship study to investigate efficacy of fructo-oligosaccharides (FOS) on human gut microflora

(2019) Disha Tandon et al.   Scientific Reports

Mood and Microbes

(2019) John R. Kelly et al.   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

Efficacy of a multispecies probiotic as adjunctive therapy in generalized anxiety disorder: a double blind, randomized, placebo-controlled trial

(2019) Sevda Eskandarzadeh et al.   NUTRITIONAL NEUROSCIENCE

Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients

(2019) Jin-Young Lee et al.   Genes

Health Benefits of Lactobacillus gasseri CP2305 Tablets in Young Adults Exposed to Chronic Stress: A Randomized, Double-Blind, Placebo-Controlled Study

(2019) Kensei Nishida et al.   Nutrients

OUP accepted manuscript

(2018)   AMERICAN JOURNAL OF CLINICAL NUTRITION

Effect of probiotic and prebiotic vs placebo on psychological outcomes in patients with major depressive disorder: A randomized clinical trial

(2018) Asma Kazemi et al.   CLINICAL NUTRITION

Use of dietary indices to control for diet in human gut microbiota studies

(2018) Ruth C. E. Bowyer et al.   Microbiome

Beneficial effect of butyrate‐producing Lachnospiraceae on stress‐induced visceral hypersensitivity in rats

(2018) Jindong Zhang et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome

(2017) Maria Ines Pinto-Sanchez et al.   GASTROENTEROLOGY

Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum

(2017) Atsuko Ueki et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Probiotic reduces bacterial translocation in type 2 diabetes mellitus: A randomised controlled study

(2017) Junko Sato et al.   Scientific Reports

Agathobaculum butyriciproducens gen. nov.  sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov.

(2016) Sharon Ahn et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ruthenibacterium lactatiformans gen. nov., sp. nov., an anaerobic, lactate-producing member of the family Ruminococcaceae isolated from human faeces

(2016) Andrei N. Shkoporov et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

(2016) John R. Kelly et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism

(2016) P Zheng et al.   MOLECULAR PSYCHIATRY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Clinical and metabolic response to probiotic administration in patients with major depressive disorder: A randomized, double-blind, placebo-controlled trial

(2016) Ghodarz Akkasheh et al.   NUTRITION

Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials

(2016) Nadja B. Kristensen et al.   Genome Medicine

MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities

(2016) Kim-Anh Lê Cao et al.   PLoS One

Altered fecal microbiota composition in patients with major depressive disorder

(2015) Haiyin Jiang et al.   BRAIN BEHAVIOR AND IMMUNITY

A randomized controlled trial to test the effect of multispecies probiotics on cognitive reactivity to sad mood

(2015) Laura Steenbergen et al.   BRAIN BEHAVIOR AND IMMUNITY

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

The effects of probiotics on mental health and hypothalamic–pituitary–adrenal axis: A randomized, double-blind, placebo-controlled trial in petrochemical workers

(2015) Ali Akbar Mohammadi et al.   NUTRITIONAL NEUROSCIENCE

Correlation between the human fecal microbiota and depression

(2014) A. Naseribafrouei et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Selective carbohydrate utilization by lactobacilli and bifidobacteria

(2012) D. Watson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Chimpanzees and humans harbour compositionally similar gut enterotypes

(2012) Andrew H. Moeller et al.   Nature Communications

An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota

(2011) Ian B Jeffery et al.   GUT

Assessment of psychotropic-like properties of a probiotic formulation ( Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects

(2010) Michaël Messaoudi et al.   BRITISH JOURNAL OF NUTRITION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One