Metagenomic analysis exploring taxonomic and functional diversity of bacterial communities of a Himalayan urban fresh water lake
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Metagenomic analysis exploring taxonomic and functional diversity of bacterial communities of a Himalayan urban fresh water lake
Authors
Keywords
Community structure, Metagenomics, Microbial taxonomy, Bacteria, Lakes, Microbiome, Fresh water, Bacterial taxonomy
Journal
PLoS One
Volume 16, Issue 3, Pages e0248116
Publisher
Public Library of Science (PLoS)
Online
2021-03-26
DOI
10.1371/journal.pone.0248116
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Multivariate Statistical Approach to Study Spatiotemporal Variations in Water Quality of aHimalayan Urban Fresh Water Lake
- (2020) Tawseef Ahmad et al. Water
- An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
- (2019) K. Jordaan et al. PLoS One
- Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry
- (2019) Sara F. Paver et al. ENVIRONMENTAL MICROBIOLOGY
- iPath3.0: interactive pathways explorer v3
- (2018) Youssef Darzi et al. NUCLEIC ACIDS RESEARCH
- The impact of human activities and lifestyles on the interlinked microbiota and health of humans and of ecosystems
- (2018) Lucette Flandroy et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207
- (2018) Zarrin Basharat et al. Scientific Reports
- Metagenomic Analysis of Cyanobacteria in an Oligotrophic Tropical Estuary, South Atlantic
- (2018) Helen M. de Jesus Affe et al. Frontiers in Microbiology
- Exploring bacterial communities and biodegradation genes in activated sludge from pesticide wastewater treatment plants via metagenomic analysis
- (2018) Hua Fang et al. ENVIRONMENTAL POLLUTION
- Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
- (2018) Natalie Hicks et al. Frontiers in Microbiology
- Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios
- (2018) Juanjo Rodríguez et al. Frontiers in Microbiology
- Taxonomic diversity of bacteria from mangrove sediments of Goa: metagenomic and functional analysis
- (2018) Shyamalina Haldar et al. 3 Biotech
- The immune response to Prevotella bacteria in chronic inflammatory disease
- (2017) Jeppe Madura Larsen IMMUNOLOGY
- Sphingobacterium soli sp. nov., isolated from soil
- (2017) Yu-Song Fu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics
- (2017) Mireia Lopez-Siles et al. ISME Journal
- Deciphering Diversity Indices for a Better Understanding of Microbial Communities
- (2017) Bo-Ra Kim et al. JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
- Linking human-biophysical interactions with the trophic status of Dal Lake, Kashmir Himalaya, India
- (2017) Irfan Rashid et al. LIMNOLOGICA
- Temporal dynamics of bacterial communities and predicted nitrogen metabolism genes in a full-scale wastewater treatment plant
- (2017) Xiao-Yan Fan et al. RSC Advances
- Exploring the Impacts of Anthropogenic Disturbance on Seawater and Sediment Microbial Communities in Korean Coastal Waters Using Metagenomics Analysis
- (2017) Nam-Il Won et al. International Journal of Environmental Research and Public Health
- Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance
- (2017) Juan Castro-Severyn et al. Frontiers in Microbiology
- Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica
- (2017) Hyunmin Koo et al. Frontiers in Microbiology
- Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams
- (2017) Ze Ren et al. Frontiers in Microbiology
- A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization
- (2017) Wayne Dawson et al. Frontiers in Microbiology
- Structural diversity of ABC transporters
- (2014) Josy ter Beek et al. JOURNAL OF GENERAL PHYSIOLOGY
- Rfam 12.0: updates to the RNA families database
- (2014) Eric P. Nawrocki et al. NUCLEIC ACIDS RESEARCH
- Niches, Population Structure and Genome Reduction in Ochrobactrum intermedium: Clues to Technology-Driven Emergence of Pathogens
- (2014) Fabien Aujoulat et al. PLoS One
- Human and Environmental Impacts on River Sediment Microbial Communities
- (2014) Sean M. Gibbons et al. PLoS One
- Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover
- (2014) Christopher Staley et al. Frontiers in Microbiology
- Prosthecobacter algae sp. nov., isolated from activated sludge using algal metabolites
- (2013) J. Lee et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- Comparative Genomic Analysis Indicates that Niche Adaptation of Terrestrial Flavobacteria Is Strongly Linked to Plant Glycan Metabolism
- (2013) Max Kolton et al. PLoS One
- Metabolic characteristics of the species Variovorax paradoxus
- (2012) Barbara Satola et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- A Guide to the Natural History of Freshwater Lake Bacteria
- (2011) R. J. Newton et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
- (2011) Rohit Ghai et al. PLoS One
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Exiguobacterium genus: biodiversity and biogeography
- (2009) Tatiana A. Vishnivetskaya et al. EXTREMOPHILES
- Microbial communities in contrasting freshwater marsh microhabitats
- (2009) Nanna Buesing et al. FEMS MICROBIOLOGY ECOLOGY
- An Integrated Genomics Approach to Define Niche Establishment by Rhodococcus fascians
- (2009) S. Depuydt et al. PLANT PHYSIOLOGY
- Metagenomic Analysis of RNA Viruses in a Fresh Water Lake
- (2009) Appolinaire Djikeng et al. PLoS One
- Acinetobacter lwoffii: Bacteremia associated with acute gastroenteritis
- (2009) Nora G. Regalado et al. Travel Medicine and Infectious Disease
- A review on the interactions between gut microbiota and innate immunity of fish: Table 1
- (2008) Geovanny D. Gómez et al. FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started