PacBio sequencing of Glomeromycota rDNA: a novel amplicon covering all widely used ribosomal barcoding regions and its applicability in taxonomy and ecology of arbuscular mycorrhizal fungi

High-throughput sequencing view on the magnitude of global fungal diversity

(2021) Petr Baldrian et al.   FUNGAL DIVERSITY

Temperature and pH define the realised niche space of arbuscular mycorrhizal fungi

(2021) John Davison et al.   NEW PHYTOLOGIST

Arbuscular mycorrhizal fungi composition in soils of switchgrass harvested for bioenergy under alternate nitrogen management

(2020) Alden C. Dirks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identifying the ‘unidentified’ fungi: a global-scale long-read third-generation sequencing approach

(2020) Leho Tedersoo et al.   FUNGAL DIVERSITY

Diverse fungal communities associated with the roots of isoetid plants are structured by host plant identity

(2020) Radka Sudová et al.   Fungal Ecology

Optimized metabarcoding with Pacific biosciences enables semi‐quantitative analysis of fungal communities

(2020) Carles Castaño et al.   NEW PHYTOLOGIST

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

(2020) Tomáš Větrovský et al.   Scientific Data

Utility of large subunit for environmental sequencing of arbuscular mycorrhizal fungi: a new reference database and pipeline

(2020) Camille S. Delavaux et al.   NEW PHYTOLOGIST

Combining the 5.8S and ITS 2 to improve classification of fungi

(2019) Felix Heeger et al.   Methods in Ecology and Evolution

A meta-analysis of global fungal distribution reveals climate-driven patterns

(2019) Tomáš Větrovský et al.   Nature Communications

SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses

(2018) Tomáš Větrovský et al.   BIOINFORMATICS

When the ribosomal DNA does not tell the truth: The case of the taxonomic position of Kurtia argillacea , an ericoid mycorrhizal fungus residing among Hymenochaetales

(2018) Miroslav Kolařík et al.   Fungal Biology

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

(2018) Robert Lücking et al.   IMA Fungus

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

(2017) Xuhua Xia   JOURNAL OF HEREDITY

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

(2017) Leho Tedersoo et al.   NEW PHYTOLOGIST

Communities of arbuscular mycorrhizal fungi under Picconia azorica in native forests of Azores

(2017) Catarina Drumonde Melo et al.   SYMBIOSIS

Arbuscular Mycorrhizal Fungal Community Composition in Carludovica palmata, Costus scaber and Euterpe precatoria from Weathered Oil Ponds in the Ecuadorian Amazon

(2017) Mónica Garcés-Ruiz et al.   Frontiers in Microbiology

Novel soil-inhabiting clades fill gaps in the fungal tree of life

(2017) Leho Tedersoo et al.   Microbiome

Analytical Biases Associated with GC-Content in Molecular Evolution

(2017) Jonathan Romiguier et al.   Frontiers in Genetics

Arbuscular mycorrhizal fungi associating with roots of Alnus and Rubus in Europe and the Middle East

(2016) Sergei Põlme et al.   Fungal Ecology

Uniting species- and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity

(2016) Maarja Öpik et al.   Fungal Ecology

High-resolution community profiling of arbuscular mycorrhizal fungi

(2016) Klaus Schlaeppi et al.   NEW PHYTOLOGIST

Response differences of arbuscular mycorrhizal fungi communities in the roots of an aquatic and a semiaquatic species to various flooding regimes

(2016) Yutao Wang et al.   PLANT AND SOIL

Arbuscular mycorrhizal fungal communities in forest plant roots are simultaneously shaped by host characteristics and canopy-mediated light availability

(2016) Kadri Koorem et al.   PLANT AND SOIL

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi

(2015) Miranda M. Hart et al.   NEW PHYTOLOGIST

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing

(2014) Maarten Van Geel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker

(2014) Rebecca C. Mueller et al.   MOLECULAR ECOLOGY

Morphological and molecular analyses of fungal endophytes of achlorophyllous gametophytes of Diphasiastrum alpinum (Lycopodiaceae)

(2013) Karsten Horn et al.   AMERICAN JOURNAL OF BOTANY

DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences

(2013) Maarja Öpik et al.   Botany

An exotic invader drives the evolution of plant traits that determine mycorrhizal fungal diversity in a native competitor

(2013) Richard A. Lankau et al.   MOLECULAR ECOLOGY

Soil nutritional status, not inoculum identity, primarily determines the effect of arbuscular mycorrhizal fungi on the growth of Knautia arvensis plants

(2013) Pavla Doubková et al.   MYCORRHIZA

Molecular diversity of arbuscular mycorrhizal fungi associated with two co-occurring perennial plant species on a Tibetan altitudinal gradient

(2013) Xiaoliang Li et al.   MYCORRHIZA

Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi

(2013) Maarja Öpik et al.   MYCORRHIZA

An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)

(2013) Dirk Redecker et al.   MYCORRHIZA

Characterization of arbuscular mycorrhizal fungal communities with respect to zonal vegetation in a coastal dune ecosystem

(2013) Ai Kawahara et al.   OECOLOGIA

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

(2013) Petr Kohout et al.   SOIL BIOLOGY & BIOCHEMISTRY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Surprising spectra of root-associated fungi in submerged aquatic plants

(2012) Petr Kohout et al.   FEMS MICROBIOLOGY ECOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Ninety-year-, but not single, application of phosphorus fertilizer has a major impact on arbuscular mycorrhizal fungal communities

(2012) Ying Cheng et al.   PLANT AND SOIL

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The dawn of symbiosis between plants and fungi

(2011) M. I. Bidartondo et al.   Biology Letters

Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

(2011) Manuela Krüger et al.   NEW PHYTOLOGIST

Global diversity and distribution of arbuscular mycorrhizal fungi

(2011) Stephanie N. Kivlin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular analysis of AMF diversity in aquatic macrophytes: A comparison of oligotrophic and utra-oligotrophic lakes

(2010) Jacqueline Baar et al.   AQUATIC BOTANY

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

DNA-based species level detection ofGlomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi

(2009) Manuela Krüger et al.   NEW PHYTOLOGIST

Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi

(2008) Jaikoo Lee et al.   FEMS MICROBIOLOGY ECOLOGY