High-resolution community profiling of arbuscular mycorrhizal fungi

High-resolution phylogenetic microbial community profiling

(2016) Esther Singer et al.   ISME Journal

Comment on "Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism"

(2016) T. D. Bruns et al.   SCIENCE

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

(2016) Patrick D. Schloss et al.   PeerJ

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rhizoglomus, a new genus of the Glomeraceae

(2015) Ewald Sieverding et al.   MYCOTAXON

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Nitrogen and phosphorus additions impact arbuscular mycorrhizal abundance and molecular diversity in a tropical montane forest

(2014) Tessa Camenzind et al.   GLOBAL CHANGE BIOLOGY

The role of community and population ecology in applying mycorrhizal fungi for improved food security

(2014) Alia Rodriguez et al.   ISME Journal

Improved performance of the PacBio SMRT technology for 16S rDNA sequencing

(2014) Jennifer J. Mosher et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns?

(2014) Ylva Lekberg et al.   NEW PHYTOLOGIST

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples

(2013) Jennifer J. Mosher et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Potato-associated arbuscular mycorrhizal fungal communities in the Peruvian Andes

(2013) Carolina Senés-Guerrero et al.   MYCORRHIZA

An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)

(2013) Dirk Redecker et al.   MYCORRHIZA

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

(2013) Erin B Fichot et al.   Microbiome

Host Preferences of Arbuscular Mycorrhizal Fungi Colonizing Annual Herbaceous Plant Species in Semiarid Mediterranean Prairies

(2012) E. Torrecillas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

(2012) Mauricio O Carneiro et al.   BMC GENOMICS

Mycorrhiza-Induced Resistance and Priming of Plant Defenses

(2012) Sabine C. Jung et al.   JOURNAL OF CHEMICAL ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Establishment, persistence and effectiveness of arbuscular mycorrhizal fungal inoculants in the field revealed using molecular genetic tracing and measurement of yield components

(2012) Elisa Pellegrino et al.   NEW PHYTOLOGIST

Mycorrhizal fungal establishment in agricultural soils: factors determining inoculation success

(2012) Erik Verbruggen et al.   NEW PHYTOLOGIST

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Suppression of fungal and nematode plant pathogens through arbuscular mycorrhizal fungi

(2011) S. D. Veresoglou et al.   Biology Letters

Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing

(2011) Alex J. Dumbrell et al.   NEW PHYTOLOGIST

Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

(2011) Manuela Krüger et al.   NEW PHYTOLOGIST

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories

(2010) JEFF R. POWELL et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils

(2010) Erik Verbruggen et al.   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

A flexible and efficient template format for circular consensus sequencing and SNP detection

(2010) K. J. Travers et al.   NUCLEIC ACIDS RESEARCH

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Glomus intraradicesDAOM197198’, a model fungus in arbuscular mycorrhiza research, is notGlomus intraradices

(2009) Herbert Stockinger et al.   NEW PHYTOLOGIST

DNA-based species level detection ofGlomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi

(2009) Manuela Krüger et al.   NEW PHYTOLOGIST

Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus

(2009) Hannes A. Gamper et al.   NEW PHYTOLOGIST

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY