Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon

(2013) Carolyn F. Weber et al.   Frontiers in Microbiology

Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots

(2012) Frederick A Matsen et al.   Algorithms for Molecular Biology

Soil Fungal Cellobiohydrolase I Gene (cbhI) Composition and Expression in a Loblolly Pine Plantation under Conditions of Elevated Atmospheric CO2and Nitrogen Fertilization

(2012) Carolyn F. Weber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

(2012) Sarah D. Eisenlord et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil carbon sequestration in prairie grasslands increased by chronic nitrogen addition

(2012) Dario A. Fornara et al.   ECOLOGY

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis

(2012) Benjamin E. Wolfe et al.   PLoS One

Mineral fertilizer alters cellulolytic community structure and suppresses soil cellobiohydrolase activity in a long-term fertilization experiment

(2012) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Responses of soil cellulolytic fungal communities to elevated atmospheric CO2 are complex and variable across five ecosystems

(2011) Carolyn F. Weber et al.   ENVIRONMENTAL MICROBIOLOGY

Elevated CO2 affects photosynthetic responses in canopy pine and subcanopy deciduous trees over 10 years: a synthesis from Duke FACE

(2011) David S. Ellsworth et al.   GLOBAL CHANGE BIOLOGY

Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest

(2011) Ivan P. Edwards et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atmospheric CO2and soil extracellular enzyme activity: a meta-analysis and CO2gradient experiment

(2011) Alexia M. Kelley et al.   Ecosphere

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil

(2010) Petr Baldrian et al.   BIOLOGY AND FERTILITY OF SOILS

Fungal community composition and function after long-term exposure of northern forests to elevated atmospheric CO2 and tropospheric O3

(2010) IVAN P. EDWARDS et al.   GLOBAL CHANGE BIOLOGY

Vertical distribution of fungal communities in tallgrass prairie soil

(2010) Ari Jumpponen et al.   MYCOLOGIA

Reduction of forest soil respiration in response to nitrogen deposition

(2010) I. A. Janssens et al.   Nature Geoscience

Nitrogen alters carbon dynamics during early succession in boreal forest

(2010) Steven D. Allison et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

Re-assessment of plant carbon dynamics at the Duke free-air CO2 enrichment site: interactions of atmospheric [CO2] with nitrogen and water availability over stand development

(2009) Heather R. McCarthy et al.   NEW PHYTOLOGIST

Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs?

(2009) Petr Baldrian   OECOLOGIA

Isolation of Fungal Cellobiohydrolase I Genes from Sporocarps and Forest Soils by PCR

(2008) I. P. Edwards et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED

(2008) David S. LeBauer et al.   ECOLOGY

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Effects of Long-Term Nitrogen Addition on Microbial Enzyme Activity in Eight Forested and Grassland Sites: Implications for Litter and Soil Organic Matter Decomposition

(2008) Bonnie L. Keeler et al.   ECOSYSTEMS

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling

(2008) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

(2008) J. M. Talbot et al.   FUNCTIONAL ECOLOGY

Altered patterns of soil carbon substrate usage and heterotrophic respiration in a pine forest with elevated CO2and N fertilization

(2008) SHARON A. BILLINGS et al.   GLOBAL CHANGE BIOLOGY

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Spatial scaling of functional gene diversity across various microbial taxa

(2008) J. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA