Phylogeny, divergence times, and diversification in Calophyllaceae: Linking key characters and habitat changes to the evolution of Neotropical Calophylleae

Transitions between biomes are common and directional in Bombacoideae (Malvaceae)

(2020) Alexander Zizka et al.   JOURNAL OF BIOGEOGRAPHY

Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae?

(2020) Marcelo Reginato et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Advanced understanding of phylogenetic relationships, morphological evolution and biogeographic history of the mega-diverse plant genus Myrcia and its relatives (Myrtaceae: Myrteae)

(2019) Bruno S. Amorim et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RASP 4: ancestral state reconstruction tool for multiple genes and characters

(2019) Yan Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing deep-time palaeoclimate legacies in the clusioid Malpighiales unveils their role in the evolution and extinction of the boreotropical flora

(2018) Andrea S. Meseguer et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection

(2018) Richard H. Ree et al.   JOURNAL OF BIOGEOGRAPHY

Amazonia is the primary source of Neotropical biodiversity

(2018) Alexandre Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hidden state models improve state-dependent diversification approaches, including biogeographical models

(2018) Daniel S. Caetano et al.   EVOLUTION

Clusiaceae s.l. (Calophyllaceae, Clusiaceae s.s. and Hypericaceae) in the Viruá National Park, Roraima, Brazil

(2017) FERNANDA NUNES CABRAL et al.   Phytotaxa

Evolution of seed dispersal in the Cerrado biome: ecological and phylogenetic considerations

(2016) Marcelo Kuhlmann et al.   Acta Botanica Brasilica

Dispersal largely explains the Gondwanan distribution of the ancient tropical clusioid plant clade

(2016) Brad R. Ruhfel et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic analysis ofAttalea(Arecaceae): insights into the historical biogeography of a recently diversified Neotropical plant group

(2016) Cintia Freitas et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction

(2016) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Phylogeny of theRosidae: A dense taxon sampling analysis

(2016) Miao Sun et al.   Journal of Systematics and Evolution

Calophyllum (Clusiaceae – Guttiferae) in Africa

(2016) Martin Cheek et al.   KEW BULLETIN

Species tree phylogeny and biogeography of the Neotropical genus Pradosia (Sapotaceae, Chrysophylloideae)

(2015) Mário H. Terra-Araujo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenies from concatenated data: Is the end nigh?

(2015) Michael D. Pirie   TAXON

Biome Shifts and Niche Evolution in Plants

(2014) Michael J. Donoghue et al.   Annual Review of Ecology Evolution and Systematics

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolution of angiosperm seed disperser mutualisms: the timing of origins and their consequences for coevolutionary interactions between angiosperms and frugivores

(2014) Ove Eriksson   BIOLOGICAL REVIEWS

INVESTIGATING PROCESSES OF NEOTROPICAL RAIN FOREST TREE DIVERSIFICATION BY EXAMINING THE EVOLUTION AND HISTORICAL BIOGEOGRAPHY OF THE PROTIEAE (BURSERACEAE)

(2014) Paul V. A. Fine et al.   EVOLUTION

Should genes with missing data be excluded from phylogenetic analyses?

(2014) Wei Jiang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

Multivariate analysis of morphological and anatomical characters ofCalophyllum(Calophyllaceae) in South America

(2013) Dilys M. Vela Díaz   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Cladistic biogeography of the Neotropical region: identifying the main events in the diversification of the terrestrial biota

(2013) Juan J. Morrone   CLADISTICS

DISENTANGLING THE EFFECTS OF KEY INNOVATIONS ON THE DIVERSIFICATION OF BROMELIOIDEAE (BROMELIACEAE)

(2013) Daniele Silvestro et al.   EVOLUTION

Combined Morphological and Molecular Phylogeny of the Clusioid Clade (Malpighiales) and the Placement of the Ancient Rosid Macrofossil Paleoclusia

(2013) Brad R. Ruhfel et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae

(2013) Thomas J. Givnish et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

(2013) Ingrid Parmentier et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Neotropical Plant Evolution: Assembling the Big Picture

(2012) Colin E. Hughes et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences

(2012) Mathieu Perret et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeny and biogeography in Solanaceae, Verbenaceae and Bignoniaceae: a comparison of continental and intercontinental diversification patterns

(2012) Richard G. Olmstead   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeographical patterns shed light on evolutionary process in South America

(2012) A. C. Turchetto-Zolet et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

(2012) Christopher S. Drummond et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogeny of the clusioid clade (Malpighiales): Evidence from the plastid and mitochondrial genomes

(2011) Brad R. Ruhfel et al.   AMERICAN JOURNAL OF BOTANY

Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: Insights from an eight-locus plastid phylogeny

(2011) Thomas J. Givnish et al.   AMERICAN JOURNAL OF BOTANY

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

(2010) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

(2009) Kenneth J. Wurdack et al.   AMERICAN JOURNAL OF BOTANY

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Influence of Andean uplift on climate and paleoaltimetry estimates

(2009) Todd A. Ehlers et al.   EARTH AND PLANETARY SCIENCE LETTERS

Molecular phylogeny and biogeography of the eastern Tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): Cryptic diversification in Brazilian Atlantic Forest

(2009) Helena Mata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic biome conservatism on a global scale

(2009) Michael D. Crisp et al.   NATURE

Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire

(2009) M. F. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracing the impact of the Andean uplift on Neotropical plant evolution

(2009) A. Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest

(2008) Ana Carolina Carnaval et al.   JOURNAL OF BIOGEOGRAPHY

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY