Phylogeny of theRosidae: A dense taxon sampling analysis

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Global versus Chinese perspectives on the phylogeny of the N-fixing clade

(2016) Hong-Lei Li et al.   Journal of Systematics and Evolution

Tree of life for the genera of Chinese vascular plants

(2016) Zhi-Duan Chen et al.   Journal of Systematics and Evolution

Diversification of Dombeyoideae (Malvaceae) in the Mascarenes: Old Taxa on Young Islands?

(2015) Timothée Le Péchon et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

(2015) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust ANOVA Approach to Estimating a Phylogeny from Multiple Genes

(2015) Ximing Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

(2015) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deep phylogenetic incongruence in the angiosperm clade Rosidae

(2015) Miao Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The butterfly plant arms-race escalated by gene and genome duplications

(2015) Patrick P. Edger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Describing a New Species into a Polyphyletic Genus: Taxonomic Novelty in Ledermanniella s.l. (Podostemaceae) from Cameroon

(2015) John J. Schenk et al.   SYSTEMATIC BOTANY

Generic phylogeny and character evolution in Urticeae (Urticaceae) inferred from nuclear and plastid DNA regions

(2015) Changkyun Kim et al.   TAXON

A revision of generic boundaries and nomenclature in the North American cleomoid clade (Cleomaceae)

(2015) Eric H. Roalson et al.   Phytotaxa

Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change

(2015) Hong-Lei Li et al.   Scientific Reports

Identification of nuclear low-copy genes and their phylogenetic utility in rosids

(2015) Baohua Wang et al.   GENOME

Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming

(2015) Ning Zhang et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Resurrection of Angelesia, a Southeast Asian genus of Chrysobalanaceae

(2014) C.A. Sothers et al.   BLUMEA

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

(2014) Brad R Ruhfel et al.   BMC EVOLUTIONARY BIOLOGY

Diversification of almonds, peaches, plums and cherries – Molecular systematics and biogeographic history of Prunus (Rosaceae)

(2014) Siew-Wai Chin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetics, ancestral state reconstruction, and a new infrafamilial classification of the pantropical Ochnaceae (Medusagynaceae, Ochnaceae s.str., Quiinaceae) based on five DNA regions

(2014) Julio V. Schneider et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene

(2014) Xiao-Guo Xiang et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Sibbaldia: a molecular phylogenetic study of a remarkably polyphyletic genus in Rosaceae

(2014) Torsten Eriksson et al.   PLANT SYSTEMATICS AND EVOLUTION

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies

(2014) Zhenxiang Xi et al.   SYSTEMATIC BIOLOGY

A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0

(2014) Adam L. Bazinet et al.   SYSTEMATIC BIOLOGY

A Phylogeny of the Violaceae (Malpighiales) Inferred from Plastid DNA Sequences: Implications for Generic Diversity and Intrafamilial Classification

(2014) Gregory A. Wahlert et al.   SYSTEMATIC BOTANY

Resolved phylogeny of Cleomaceae based on all three genomes

(2014) Melanie J. Patchell et al.   TAXON

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in “Terebinthaceae” (Anacardiaceae and Burseraceae)

(2014) Andrea Weeks et al.   Frontiers in Genetics

Phylogenetic relationships among the North American cleomoids (Cleomaceae): A test of Iltis's reduction series

(2013) James P. Riser et al.   AMERICAN JOURNAL OF BOTANY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography

(2013) Limin Lu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogeny of the nettle family (Urticaceae) inferred from multiple loci of three genomes and extensive generic sampling

(2013) Zeng-Yuan Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Reconstructing the deep-branching relationships of the papilionoid legumes

(2013) D. Cardoso et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Exploring the tempo of species diversification in legumes

(2013) E.J.M. Koenen et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Wilczekra, a New Genus of Celastraceae for a Disjunct Lineage of Euonymus

(2013) Mark P. Simmons et al.   SYSTEMATIC BOTANY

Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species-rich clades

(2013)   TAXON

Molecular phylogenetics and character evolution of Cannabaceae

(2013) Mei-Qing Yang et al.   TAXON

Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early-branching lineages

(2012) Domingos Cardoso et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

First Miocene fossils of Vivianiaceae shed new light on phylogeny, divergence times, and historical biogeography of Geraniales

(2012) LUIS PALAZZESI et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Molecular phylogenetic analysis of Podostemaceae: implications for taxonomy of major groups

(2012) SATOSHI KOI et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Combined phylogenetic analyses reveal interfamilial relationships and patterns of floral evolution in the eudicot order Fabales

(2012) M. Angélica Bello et al.   CLADISTICS

Molecular phylogenetic analysis of Passifloraceae sensu lato (Malpighiales) based on plastid and nuclear DNA sequences

(2012) Toru Tokuoka   JOURNAL OF PLANT RESEARCH

Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae)

(2012) Eugenia Y.Y. Lo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Callianthe (Malvaceae): A New Genus of Neotropical Malveae

(2012) Aliya A. Donnell et al.   SYSTEMATIC BOTANY

Multi-gene Region Phylogenetic Analysis of the Grape Family (Vitaceae)

(2012) Anna Trias-Blasi et al.   SYSTEMATIC BOTANY

Phylogeny of Celastraceae Subfamilies Cassinoideae and Tripterygioideae Inferred from Morphological Characters and Nuclear and Plastid Loci

(2012) Mark Simmons   SYSTEMATIC BOTANY

Phylogeny of the clusioid clade (Malpighiales): Evidence from the plastid and mitochondrial genomes

(2011) Brad R. Ruhfel et al.   AMERICAN JOURNAL OF BOTANY

Understanding angiosperm diversification using small and large phylogenetic trees

(2011) S. A. Smith et al.   AMERICAN JOURNAL OF BOTANY

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Newly Sequenced Nuclear Gene (Xdh) for Inferring Angiosperm Phylogeny1

(2011) Cynthia M Morton   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Revision of Ryssopterys and transfer to Stigmaphyllon (Malpighiaceae)

(2011) C. Anderson   BLUMEA

Phylogenetic Analysis of the Plastid Inverted Repeat for 244 Species: Insights into Deeper-Level Angiosperm Relationships from a Long, Slowly Evolving Sequence Region

(2011) Michael J. Moore et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Phylogeny of Celastraceae subfamily Hippocrateoideae inferred from morphological characters and nuclear and plastid loci

(2011) Jennifer M. Coughenour et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics, character evolution, and pollen morphology of Cistus and Halimium (Cistaceae)

(2011) Laure Civeyrel et al.   PLANT SYSTEMATICS AND EVOLUTION

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

(2011) Hervé Sauquet et al.   SYSTEMATIC BIOLOGY

The Phylogeny of Ayenia, Byttneria, and Rayleya (Malvaceae s. l.) and its Implications for the Evolution of Growth Forms

(2011) Barbara A. Whitlock et al.   SYSTEMATIC BOTANY

Delimitation of the Segregate Genera of Maytenus s. l. (Celastraceae) Based on Morphological and Molecular Characters

(2011) Miles J. McKenna et al.   SYSTEMATIC BOTANY

Systematics and Phylogeny of Neotropical Riverweeds (Podostemaceae: Podostemoideae)

(2011) Nicholas P. Tippery et al.   SYSTEMATIC BOTANY

A Functional Phylogenomic View of the Seed Plants

(2011) Ernest K. Lee et al.   PLoS Genetics

Developmental morphology of seedling and shoot and phylogenetic relationship of Diplobryum koyamae (Podostemaceae)

(2010) Satoshi Koi et al.   AMERICAN JOURNAL OF BOTANY

A complete generic phylogeny of Malpighiaceae inferred from nucleotide sequence data and morphology

(2010) Charles C. Davis et al.   AMERICAN JOURNAL OF BOTANY

The age and diversification of the angiosperms re-revisited

(2010) Charles D. Bell et al.   AMERICAN JOURNAL OF BOTANY

Assembling the Angiosperm Tree of Life: Progress and Future Prospects

(2010) Douglas E. Soltis et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

A phylogenetic study ofPimeleaandThecanthes(Thymelaeaceae): evidence from plastid and nuclear ribosomal DNA sequence data

(2010) M. Cynthia Motsi et al.   AUSTRALIAN SYSTEMATIC BOTANY

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

Phylogenetic relationships of Combretaceae inferred from nuclear and plastid DNA sequence data: implications for generic classification

(2010) OLIVIER MAURIN et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Petenaeaceae, a new angiosperm family in Huerteales with a distant relationship to Gerrardina (Gerrardinaceae)

(2010) MAARTEN J. M. CHRISTENHUSZ et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Molecular phylogenetics of Linaceae with complete generic sampling and data from two plastid genes

(2010) JOSHUA R. McDILL et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Placement of Kuhlmanniodendron Fiaschi & Groppo in Lindackerieae (Achariaceae, Malpighiales) confirmed by analyses of rbcL sequences, with notes on pollen morphology and wood anatomy

(2010) Milton Groppo et al.   PLANT SYSTEMATICS AND EVOLUTION

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees

(2010) J. Gordon Burleigh et al.   SYSTEMATIC BIOLOGY

Biogeographic Patterns of Diversification and the Origins of C4 in Cleome (Cleomaceae)

(2010) Tatiana A. Feodorova et al.   SYSTEMATIC BOTANY

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

(2010) Yin-Long QIU et al.   Journal of Systematics and Evolution

A phylogenetic classification of tribe Poranthereae (Phyllanthaceae, Euphorbiaceae sensu lato)

(2010) Maria S. Vorontsova et al.   KEW BULLETIN

Phylogeny of the tribe Indigofereae (Leguminosae-Papilionoideae): Geographically structured more in succulent-rich and temperate settings than in grass-rich environments

(2009) Brian D. Schrire et al.   AMERICAN JOURNAL OF BOTANY

Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

(2009) Kenneth J. Wurdack et al.   AMERICAN JOURNAL OF BOTANY

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

(2009) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

(2009) J Gordon Burleigh et al.   BMC EVOLUTIONARY BIOLOGY

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The genus Bauhinia s.l. (Leguminosae): a phylogeny based on the plastid trnL–trnF region

(2009) Carole Sinou et al.   Botany

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

(2009) Pablo A. Goloboff et al.   CLADISTICS

Phylogenetic Relationship and Morphology of Dalzellia gracilis (Podostemaceae, Subfamily Tristichoideae) with Proposal of a New Genus

(2009) Satoshi Koi et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Historical biogeography and character evolution of Cistaceae (Malvales) based on analysis of plastid rbcL and trnL-trnF sequences

(2009) Beatriz Guzmán et al.   ORGANISMS DIVERSITY & EVOLUTION

How to get off the mismatch at the generic rank in African Podostemaceae?

(2009) Mike Thiv et al.   PLANT SYSTEMATICS AND EVOLUTION

Rosid radiation and the rapid rise of angiosperm-dominated forests

(2009) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

More Miocene Dispersal Between Africa and Asia—the Case of Bridelia (Phyllanthaceae)

(2009) Yongquan Li et al.   SYSTEMATIC BOTANY

Infra-familial phylogeny of Urticaceae, using chloroplast sequence data

(2008) Julisasi T. Hadiah et al.   AUSTRALIAN SYSTEMATIC BOTANY

Systematics of Capparaceae and Cleomaceae: an evaluation of the generic delimitations of Capparis and Cleome using plastid DNA sequence dataThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

(2008) Jocelyn C. Hall   Botany

Phylogenetic patterns and diversification in the caesalpinioid legumesThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

(2008) Anne Bruneau et al.   Botany

Molecular phylogenetics of Alchemilla, Aphanes and Lachemilla (Rosaceae) inferred from plastid and nuclear intron and spacer DNA sequences, with comments on generic classification

(2008) B. Gehrke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Five molecular markers reveal extensive morphological homoplasy and reticulate evolution in the Malva alliance (Malvaceae)

(2008) Pedro Escobar García et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny and Historical Biogeography of Geraniaceae in Relation to Climate Changes and Pollination Ecology

(2008) Omar Fiz et al.   SYSTEMATIC BOTANY

Phylogeny and Biogeography of Tribe Hibisceae (Malvaceae) on Madagascar

(2008) Margaret M. Koopman et al.   SYSTEMATIC BOTANY