Divergent diapause life history timing drives both allochronic speciation and reticulate hybridization in an adaptive radiation ofRhagoletisflies

Speciation Associated with Shifts in Migratory Behavior in an Avian Radiation

(2020) Valentina Gómez-Bahamón et al.   CURRENT BIOLOGY

Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats

(2020) Mark Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A rapidly evolved shift in life‐history timing during ecological speciation is driven by the transition between developmental phases

(2020) Thomas H. Q. Powell et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Massive haplotypes underlie ecotypic differentiation in sunflowers

(2020) Marco Todesco et al.   NATURE

The evolution of strong reproductive isolation between sympatric intertidal snails

(2020) Sean Stankowski et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Can the genomics of ecological speciation be predicted across the divergence continuum from host races to species? A case study in Rhagoletis

(2020) Peter J. Meyers et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sympatric speciation in mountain roses ( Metrosideros ) on an oceanic island

(2020) Owen G. Osborne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Introgression across evolutionary scales suggests reticulation contributes to Amazonian tree diversity

(2020) Rowan J. Schley et al.   MOLECULAR ECOLOGY

The ecological and genomic basis of explosive adaptive radiation

(2020) Matthew D. McGee et al.   NATURE

Genome-wide variation and transcriptional changes in diverse developmental processes underlie the rapid evolution of seasonal adaptation

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A Combinatorial View on Speciation and Adaptive Radiation

(2019) David A. Marques et al.   TRENDS IN ECOLOGY & EVOLUTION

Cascading reproductive isolation: Plant phenology drives temporal isolation among populations of a host‐specific herbivore

(2019) Glen R. Hood et al.   EVOLUTION

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

(2019) Scott A. Taylor et al.   Nature Ecology & Evolution

From sympatry to parapatry: a rapid change in the spatial context of incipient allochronic speciation

(2019) Christian Burban et al.   EVOLUTIONARY ECOLOGY

Cryptic species and independent origins of allochronic populations within a seabird species complex (Hydrobates spp.)

(2019) Rebecca S. Taylor et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hybridization increases population variation during adaptive radiation

(2019) Peter R. Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparing Adaptive Radiations Across Space, Time, and Taxa

(2019) Rosemary G Gillespie et al.   JOURNAL OF HEREDITY

Identifying Diagnostic Genetic Markers for a Cryptic Invasive Agricultural Pest: A Test Case Using the Apple Maggot Fly (Diptera: Tephritidae)

(2019) Meredith M Doellman et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Coupling, Reinforcement, and Speciation

(2018) Roger K. Butlin et al.   AMERICAN NATURALIST

These aren't the loci you're looking for: Principles of effective SNP filtering for molecular ecologists

(2018) Shannon J. O'Leary et al.   MOLECULAR ECOLOGY

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression

(2018) Mark Ravinet et al.   PLoS Genetics

Non-Pleiotropic Coupling of Daily and Seasonal Temporal Isolation in the European Corn Borer

(2018) Rebecca Levy et al.   Genes

Transitions from Single- to Multi-Locus Processes during Speciation with Gene Flow

(2018) Martin Schilling et al.   Genes

Standing geographic variation in eclosion time and the genomics of host race formation in Rhagoletis pomonella fruit flies

(2018) Meredith M. Doellman et al.   Ecology and Evolution

Revisiting the particular role of host shifts in initiating insect speciation

(2017) Andrew A. Forbes et al.   EVOLUTION

A test of genomic modularity among life-history adaptations promoting speciation with gene flow

(2017) Gregory J. Ragland et al.   MOLECULAR ECOLOGY

The role of allochrony in speciation

(2017) Rebecca S. Taylor et al.   MOLECULAR ECOLOGY

Rapid hybrid speciation in Darwin’s finches

(2017) Sangeet Lamichhaney et al.   SCIENCE

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Divergence before the host shift? Prezygotic reproductive isolation among three varieties of a specialist fly on a single host plant

(2016) ALAINE C. HIPPEE et al.   ECOLOGICAL ENTOMOLOGY

Divergence of the diapause transcriptome in apple maggot flies: winter regulation and post-winter transcriptional repression

(2016) Peter J. Meyers et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Selection against recombinant hybrids maintains reproductive isolation in hybridizingPopulusspecies despite F1fertility and recurrent gene flow

(2016) Camille Christe et al.   MOLECULAR ECOLOGY

Loss of sexual isolation in a hybridizing stickleback species pair

(2016) Alycia C. R. Lackey et al.   Current Zoology

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

(2015) Scott P. Egan et al.   ECOLOGY LETTERS

Hybridization and the spread of the apple maggot fly,Rhagoletis pomonella(Diptera: Tephritidae), in the northwestern United States

(2015) Tracy Arcella et al.   Evolutionary Applications

Testing for parallel allochronic isolation in lake-stream stickleback

(2015) D. Hanson et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Differences in performance and transcriptome-wide gene expression associated withRhagoletis(Diptera: Tephritidae) larvae feeding in alternate host fruit environments

(2015) Gregory J. Ragland et al.   MOLECULAR ECOLOGY

Sequential divergence and the multiplicative origin of community diversity

(2015) Glen R. Hood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomics of organismal diversification illuminated by adaptive radiations

(2015) Daniel Berner et al.   TRENDS IN GENETICS

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(2014) Anthony M. Bolger et al.   BIOINFORMATICS

UNIFICATION OF METHODS FOR ESTIMATING THE STRENGTH OF REPRODUCTIVE ISOLATION

(2014) James M. Sobel et al.   EVOLUTION

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

The lost generation hypothesis: could climate change drive ectotherms into a developmental trap?

(2014) Hans Van Dyck et al.   OIKOS

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

GENETIC DIVERGENCE ALONG THE SPECIATION CONTINUUM: THE TRANSITION FROM HOST RACE TO SPECIES INRHAGOLETIS(DIPTERA: TEPHRITIDAE)

(2013) Thomas H. Q. Powell et al.   EVOLUTION

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ecological adaptation and reproductive isolation in sympatry: genetic and phenotypic evidence for native host races ofRhagoletis pomonella

(2013) Thomas H. Q. Powell et al.   MOLECULAR ECOLOGY

Evidence for sexual isolation as a prezygotic barrier to gene flow between morphologically divergent species ofRhagoletisfruit flies

(2012) GLEN R. HOOD et al.   ECOLOGICAL ENTOMOLOGY

BEHAVIORAL EVIDENCE FOR FRUIT ODOR DISCRIMINATION AND SYMPATRIC HOST RACES OFRHAGOLETIS POMONELLAFLIES IN THE WESTERN UNITED STATES

(2012) Charles E. Linn Jr. et al.   EVOLUTION

ON THE SCENT OF STANDING VARIATION FOR SPECIATION: BEHAVIORAL EVIDENCE FOR NATIVE SYMPATRIC HOST RACES OF RHAGOLETIS POMONELLA (DIPTERA: TEPHRITIDAE) IN THE SOUTHERN UNITED STATES

(2012) Thomas H. Q. Powell et al.   EVOLUTION

A field test for host fruit odour discrimination and avoidance behaviour for Rhagoletis pomonella flies in the western United States

(2012) S. B. SIM et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Origins of Shared Genetic Variation in African Cichlids

(2012) Yong-Hwee E. Loh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Eutrophication causes speciation reversal in whitefish adaptive radiations

(2012) P. Vonlanthen et al.   NATURE

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Mating frequencies and production of hybrids byRhagoletis pomonellaandRhagoletis zephyria(Diptera: Tephritidae) in the laboratory

(2011) Wee L Yee et al.   CANADIAN ENTOMOLOGIST

POPULATION GENETICS AND OBJECTIVITY IN SPECIES DIAGNOSIS

(2011) Jody Hey et al.   EVOLUTION

Developmental trajectories of gene expression reveal candidates for diapause termination: a key life-history transition in the apple maggot fly Rhagoletis pomonella

(2011) G. J. Ragland et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A framework for comparing processes of speciation in the presence of gene flow

(2011) CAROLE M. SMADJA et al.   MOLECULAR ECOLOGY

Magic traits in speciation: ‘magic’ but not rare?

(2011) Maria R. Servedio et al.   TRENDS IN ECOLOGY & EVOLUTION

Energetics of Insect Diapause

(2010) Daniel A. Hahn et al.   Annual Review of Entomology

Evolution of intrinsic reproductive isolation among four North American populations of Rhagoletis pomonella (Diptera: Tephritidae)

(2010) JUAN RULL et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

Genetics and ecological speciation

(2009) D. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Life history phenology differences between southern and northern populations of the apple maggot fly,Rhagoletis pomonella

(2008) Sheila Lyons-Sobaski et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Radiation and divergence in the Rhagoletis Pomonella species complex: inferences from DNA sequence data

(2008) X. XIE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation

(2008) J. Mallet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION