Selection against recombinant hybrids maintains reproductive isolation in hybridizingPopulusspecies despite F1fertility and recurrent gene flow

Adaptive introgression as a resource for management and genetic conservation in a changing climate

(2015) Jill A. Hamilton et al.   CONSERVATION BIOLOGY

The genetic architecture of hybrid incompatibilities and their effect on barriers to introgression in secondary contact

(2015) Dorothea Lindtke et al.   EVOLUTION

Patterns of Reproductive Isolation inEucalyptus—A Phylogenetic Perspective

(2015) Matthew J. Larcombe et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

The origins of reproductive isolation in plants

(2015) Eric Baack et al.   NEW PHYTOLOGIST

Effects of Hybridization and Evolutionary Constraints on Secondary Metabolites: The Genetic Architecture of Phenylpropanoids in European Populus Species

(2015) Celine Caseys et al.   PLoS One

LANDSCAPE GENOMICS OFPOPULUS TRICHOCARPA: THE ROLE OF HYBRIDIZATION, LIMITED GENE FLOW, AND NATURAL SELECTION IN SHAPING PATTERNS OF POPULATION STRUCTURE

(2014) Armando Geraldes et al.   EVOLUTION

Adaptive gene introgression after secondary contact

(2014) Hildegard Uecker et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Unexpected ancestry ofPopulusseedlings from a hybrid zone implies a large role for postzygotic selection in the maintenance of species

(2014) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes

(2013) Carolina Bernhardsson et al.   ECOLOGY LETTERS

Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations

(2013) D Lindtke et al.   HEREDITY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species

(2013) Camille Roux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analyses of genetic ancestry enable key insights for molecular ecology

(2013) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Cryptic or mystic? Glacial tree refugia in northern Europe

(2013) P.C. Tzedakis et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa

(2012) Yuanxiu Wang et al.   GENES & GENETIC SYSTEMS

Recombinant hybrids retain heterozygosity at many loci: new insights into the genomics of reproductive isolation inPopulus

(2012) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest treePopulus trichocarpa

(2012) Gancho T. Slavov et al.   NEW PHYTOLOGIST

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Genetic analysis of post-mating reproductive barriers in hybridizing European Populus species

(2011) D Macaya-Sanz et al.   HEREDITY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Recombination rates in admixed individuals identified by ancestry-based inference

(2011) Daniel Wegmann et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genomics of isolation in hybrids

(2011) Z. Gompert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genomic Admixture Analysis in European Populus spp. Reveals Unexpected Patterns of Reproductive Isolation and Mating

(2010) C. Lexer et al.   GENETICS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Phylogeography of Populus alba (L.) and Populus tremula (L.) in Central Europe: secondary contact and hybridisation during recolonisation from disconnected refugia

(2010) Barbara Fussi et al.   Tree Genetics & Genomes

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

THE EVOLUTION OF STRONG REPRODUCTIVE ISOLATION

(2009) Nicholas H. Barton et al.   EVOLUTION

THE VARIABLE GENOMIC ARCHITECTURE OF ISOLATION BETWEEN HYBRIDIZING SPECIES OF HOUSE MICE

(2009) Katherine C. Teeter et al.   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations

(2009) A. W. NOLTE et al.   MOLECULAR ECOLOGY

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations

(2009) Alkes L. Price et al.   PLoS Genetics

Multilocus Patterns of Nucleotide Polymorphism and the Demographic History of Populus tremula

(2008) P. K. Ingvarsson   GENETICS

Reproductive isolation among two interfertile Rhododendron species: low frequency of post-F1 hybrid genotypes in alpine hybrid zones

(2008) RICHARD I. MILNE et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Admixture as the basis for genetic mapping

(2008) C. Alex Buerkle et al.   TRENDS IN ECOLOGY & EVOLUTION

THE RATE OF GENOME STABILIZATION IN HOMOPLOID HYBRID SPECIES

(2007) C. Alex Buerkle et al.   EVOLUTION

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY