Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties

Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom

(2021) T. Ben Francis et al.   ISME Journal

Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP

(2020) Claudia Hirschfeld et al.   Frontiers in Microbiology

Persistence of plastic debris and its colonization by bacterial communities after two decades on the abyssal seafloor

(2020) S. Krause et al.   Scientific Reports

Major Role of Surrounding Environment in Shaping Biofilm Community Composition on Marine Plastic Debris

(2020) Marco Basili et al.   Frontiers in Marine Science

Marine Plastic Debris: A New Surface for Microbial Colonization

(2020) Robyn J. Wright et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

The Eukaryotic Life on Microplastics in Brackish Ecosystems

(2019) Marie Therese Kettner et al.   Frontiers in Microbiology

Marine Microbial Assemblages on Microplastics: Diversity, Adaptation, and Role in Degradation

(2019) Sonja Oberbeckmann et al.   Annual Review of Marine Science

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes

(2019) Karen Krüger et al.   ISME Journal

The Plastisphere – Uncovering tightly attached plastic “specific” microorganisms

(2019) Inga Vanessa Kirstein et al.   PLoS One

Host selection and stochastic effects influence bacterial community assembly on the microalgal phycosphere

(2019) Jeffrey A. Kimbrel et al.   Algal Research-Biomass Biofuels and Bioproducts

Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment

(2019) Lee J. Pinnell et al.   Frontiers in Microbiology

Early Colonization of Weathered Polyethylene by Distinct Bacteria in Marine Coastal Seawater

(2019) Gabriel Erni-Cassola et al.   MICROBIAL ECOLOGY

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms

(2019) Katharina Kesy et al.   Frontiers in Microbiology

KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold

(2019) Takuya Aramaki et al.   BIOINFORMATICS

Spatial structure in the “Plastisphere”: Molecular resources for imaging microscopic communities on plastic marine debris

(2019) Cathleen Schlundt et al.   Molecular Ecology Resources

Selective enrichment of bacterial pathogens by microplastic biofilm

(2019) Xiaojian Wu et al.   WATER RESEARCH

Metabolic relationships of uncultured bacteria associated with the microalgae Gambierdiscus

(2019) Ian M. Rambo et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for selective bacterial community structuring on microplastics

(2018) Martin Ogonowski et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters

(2018) C. Dussud et al.   ENVIRONMENTAL POLLUTION

Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics

(2018) Sonja Oberbeckmann et al.   Frontiers in Microbiology

Flexible metagenome analysis using the MGX framework

(2018) Sebastian Jaenicke et al.   Microbiome

Alpha- and beta-mannan utilization by marine Bacteroidetes

(2018) Jing Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans

(2018) Lennart Kappelmann et al.   ISME Journal

Mature biofilm communities on synthetic polymers in seawater - Specific or general?

(2018) Inga V. Kirstein et al.   MARINE ENVIRONMENTAL RESEARCH

Plastics in the marine environment are reservoirs for antibiotic and metal resistance genes

(2018) Yuyi Yang et al.   ENVIRONMENT INTERNATIONAL

Microplastics alter composition of fungal communities in aquatic ecosystems

(2017) Marie Therese Kettner et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteria alone establish the chemical basis of the wood-fall chemosynthetic ecosystem in the deep-sea

(2017) Dimitri Kalenitchenko et al.   ISME Journal

Assessing species biomass contributions in microbial communities via metaproteomics

(2017) Manuel Kleiner et al.   Nature Communications

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Microbial hitchhikers on marine plastic debris: Human exposure risks at bathing waters and beach environments

(2016) Anisha Keswani et al.   MARINE ENVIRONMENTAL RESEARCH

Dangerous hitchhikers? Evidence for potentially pathogenic Vibrio spp. on microplastic particles

(2016) Inga V. Kirstein et al.   MARINE ENVIRONMENTAL RESEARCH

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

A bacterium that degrades and assimilates poly(ethylene terephthalate)

(2016) Shosuke Yoshida et al.   SCIENCE

Microfouling communities from pelagic and benthic marine plastic debris sampled across Mediterranean coastal waters

(2016) Montserrat Demestre et al.   SCIENTIA MARINA

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Protist-Bacteria Associations: Gammaproteobacteria and Alphaproteobacteria Are Prevalent as Digestion-Resistant Bacteria in Ciliated Protozoa

(2016) Jun Gong et al.   Frontiers in Microbiology

Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre

(2016) Jessica A. Bryant et al.   mSystems

A global inventory of small floating plastic debris

(2015) Erik van Sebille et al.   Environmental Research Letters

The biogeography of the Plastisphere: implications for policy

(2015) Linda A Amaral-Zettler et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater

(2015) Dimitri Kalenitchenko et al.   ISME Journal

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Visual account of protein investment in cellular functions

(2014) W. Liebermeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plastic debris in the open ocean

(2014) A. Cozar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alphaproteobacteria species as a source and target of lateral sequence transfers

(2014) Phuong Thi Le et al.   TRENDS IN MICROBIOLOGY

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

How Deep-Sea Wood Falls Sustain Chemosynthetic Life

(2013) Christina Bienhold et al.   PLoS One

Evaluation of microbial degradation of shipwrecks in the Baltic Sea

(2012) Charlotte Gjelstrup Björdal   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters

(2012) Timothy J Williams et al.   ISME Journal

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

(2009) Elena Zaikova et al.   ENVIRONMENTAL MICROBIOLOGY