CASSPER is a semantic segmentation-based particle picking algorithm for single-particle cryo-electron microscopy

PIXER: an automated particle-selection method based on segmentation using a deep neural network

(2019) Jingrong Zhang et al.   BMC BIOINFORMATICS

AutoCryoPicker: an unsupervised learning approach for fully automated single particle picking in Cryo-EM images

(2019) Adil Al-Azzawi et al.   BMC BIOINFORMATICS

Deep-learning with synthetic data enables automated picking of cryo-EM particle images of biological macromolecules

(2019) Ruijie Yao et al.   BIOINFORMATICS

Real-time cryo-electron microscopy data preprocessing with Warp

(2019) Dimitry Tegunov et al.   NATURE METHODS

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

(2019) Tristan Bepler et al.   NATURE METHODS

Atomic Resolution Cryo-EM Structure of β-Galactosidase

(2018) Alberto Bartesaghi et al.   STRUCTURE

cisTEM, user-friendly software for single-particle image processing

(2018) Timothy Grant et al.   eLife

APPLE picker: Automatic particle picking, a low-effort cryo-EM framework

(2018) Ayelet Heimowitz et al.   JOURNAL OF STRUCTURAL BIOLOGY

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

(2017) Ali Punjani et al.   NATURE METHODS

High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE

(2017) Toshio Moriya et al.   Jove-Journal of Visualized Experiments

DeepPicker: A deep learning approach for fully automated particle picking in cryo-EM

(2016) Feng Wang et al.   JOURNAL OF STRUCTURAL BIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structure of the TRPV1 ion channel determined by electron cryo-microscopy

(2013) Maofu Liao et al.   NATURE

High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

(2013) Shaoxia Chen et al.   ULTRAMICROSCOPY

gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy

(2013) Thai V Hoang et al.   BMC STRUCTURAL BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy

(2009) N.R. Voss et al.   JOURNAL OF STRUCTURAL BIOLOGY

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs

(2009) Tanvir R Shaikh et al.   Nature Protocols