The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense

Assessing the Involvement of Selected Phenotypes of Pseudomonas simiae PICF7 in Olive Root Colonization and Biological Control of Verticillium dahliae

(2021) Nuria Montes-Osuna et al.   Plants-Basel

Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion

(2020) Alberto Pascale et al.   Frontiers in Plant Science

Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive

(2020) Antonio J. Fernández-González et al.   Microbiome

Metagenomic Insights of the Root Colonizing Microbiome Associated with Symptomatic and Non-Symptomatic Bananas in Fusarium Wilt Infected Fields

(2020) Manoj Kaushal et al.   Plants-Basel

Tailoring plant-associated microbial inoculants in agriculture: a roadmap for successful application

(2020) Maged M Saad et al.   JOURNAL OF EXPERIMENTAL BOTANY

Unlocking the Microbiome Communities of Banana (Musa spp.) under Disease Stressed (Fusarium wilt) and Non-Stressed Conditions

(2020) Manoj Kaushal et al.   Microorganisms

First report of Fusarium oxysporum f. sp. cubense tropical race 4 (TR4) causing banana wilt in the Island of Mayotte

(2020) Jaime Aguayo et al.   PLANT DISEASE

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

(2020) Bin Ma et al.   Microbiome

Reprogrammed Endophytic Microbial Community in Maize Stalk Induced by Trichoderma asperellum Biocontrol Agent against Fusarium Diseases and Mycotoxin Accumulation

(2019) He Anle et al.   Fungal Biology

Biological Control Agents Against Fusarium Wilt of Banana

(2019) Giovanni Bubici et al.   Frontiers in Microbiology

Engineering banana endosphere microbiome to improve Fusarium wilt resistance in banana

(2019) Yupei Liu et al.   Microbiome

Deciphering microbial diversity associated with Fusarium wilt-diseased and disease-free banana rhizosphere soil

(2019) Dengbo Zhou et al.   BMC MICROBIOLOGY

Rhizosphere-enriched microbes as a pool to design synthetic communities for reproducible beneficial outputs

(2019) Maria-Dimitra Tsolakidou et al.   FEMS MICROBIOLOGY ECOLOGY

First report of Fusarium wilt Tropical Race 4 in Cavendish bananas caused by Fusarium odoratissimum in Colombia

(2019) Fernando Garcia-Bastidas et al.   PLANT DISEASE

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection

(2019) Antonio J. Fernández-González et al.   Scientific Reports

Integrated network analysis reveals the importance of microbial interactions for maize growth

(2018) Jiemeng Tao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Analysing ecological networks of species interactions

(2018) Eva Delmas et al.   BIOLOGICAL REVIEWS

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin

(2018) N. Maryani et al.   STUDIES IN MYCOLOGY

Indigenous Pseudomonas spp. Strains from the Olive (Olea europaea L.) Rhizosphere as Effective Biocontrol Agents against Verticillium dahliae: From the Host Roots to the Bacterial Genomes

(2018) Carmen Gómez-Lama Cabanás et al.   Frontiers in Microbiology

New Geographical Insights of the Latest Expansion of Fusarium oxysporum f.sp. cubense Tropical Race 4 Into the Greater Mekong Subregion

(2018) Si-Jun Zheng et al.   Frontiers in Plant Science

Fusarium Wilt of Banana: Current Knowledge on Epidemiology and Research Needs Toward Sustainable Disease Management

(2018) Miguel Dita et al.   Frontiers in Plant Science

Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community

(2017) Huzefa A. Raja et al.   JOURNAL OF NATURAL PRODUCTS

The distribution and host range of the banana Fusarium wilt fungus, Fusarium oxysporum f. sp. cubense, in Asia

(2017) Diane Mostert et al.   PLoS One

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease

(2017) Hongwu Yang et al.   Frontiers in Microbiology

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

(2017) Daria Rybakova et al.   Microbiome

Members of Gammaproteobacteria as indicator species of healthy banana plants on Fusarium wilt-infested fields in Central America

(2017) Martina Köberl et al.   Scientific Reports

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Dispersal of Bacillus subtilis and its effect on strawberry phyllosphere microbiota under open field and protection conditions

(2016) Feng Wei et al.   Scientific Reports

Management of Fusarium wilt of banana: A review with special reference to tropical race 4

(2015) Randy C. Ploetz   CROP PROTECTION

Endophytic colonization and biocontrol performance ofPseudomonas fluorescens PICF7 in olive (Olea europaeaL.) are determined neither by pyoverdine production nor swimming motility

(2015) M. Mercedes Maldonado-González et al.   ENVIRONMENTAL MICROBIOLOGY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Manipulating the banana rhizosphere microbiome for biological control of Panama disease

(2015) Chao Xue et al.   Scientific Reports

Agroforestry leads to shifts within the gammaproteobacterial microbiome of banana plants cultivated in Central America

(2015) Martina Köberl et al.   Frontiers in Microbiology

Arabidopsis thaliana as a tool to identify traits involved in Verticillium dahliae biocontrol by the olive root endophyte Pseudomonas fluorescens PICF7

(2015) M. Mercedes Maldonado-González et al.   Frontiers in Microbiology

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

The biocontrol endophytic bacterium Pseudomonas fluorescens PICF7 induces systemic defense responses in aerial tissues upon colonization of olive roots

(2014) Carmen Gómez-Lama Cabanás et al.   Frontiers in Microbiology

Fungus threatens top banana

(2013) Declan Butler   NATURE

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Biocontrol of Phytophthora Blight and Anthracnose in Pepper by Sequentially Selected Antagonistic Rhizobacteria against Phytophthora capsici

(2013) Mee Kyung Sang et al.   Plant Pathology Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

From the root to the stem: interaction between the biocontrol root endophytePseudomonas fluorescens PICF7 and the pathogenPseudomonas savastanoi NCPPB 3335 in olive knots

(2013) M. Mercedes Maldonado-González et al.   Microbial Biotechnology

Banana-Associated Microbial Communities in Uganda Are Highly Diverse but Dominated by Enterobacteriaceae

(2012) Bettina Rossmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

The use of GFP-transformed isolates to study infection of banana with Fusarium oxysporum f. sp. cubense race 4

(2011) Chunyu Li et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Endophytic Bacteria Associated with Growing Shoot Tips of Banana (Musa sp.) cv. Grand Naine and the Affinity of Endophytes to the Host

(2009) Pious Thomas et al.   MICROBIAL ECOLOGY

Soil Potassium Indices and Clay‐Sized Particles affecting Banana‐Wilt Expression Caused by Soil Fungus in Banana Plantation Development on Transported Volcanic Soils

(2008) Julia Domínguez‐Hernández et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Assessing the impact of the biological control agentBacillus thuringiensison the indigenous microbial community within the pepper plant phyllosphere

(2008) Baoguo Zhang et al.   FEMS MICROBIOLOGY LETTERS

Ubiquitous presence of normally non-culturable endophytic bacteria in field shoot-tips of banana and their gradual activation to quiescent cultivable form in tissue cultures

(2008) Pious Thomas et al.   PLANT CELL TISSUE AND ORGAN CULTURE