Analysing ecological networks of species interactions

Untangling the Tangled Bank: A Novel Method for Partitioning the Effects of Phylogenies and Traits on Ecological Networks

(2017) Vinicius A. G. Bastazini et al.   Evolutionary Biology

Ecological interactions and the Netflix problem

(2017) Philippe Desjardins-Proulx et al.   PeerJ

The multilayer nature of ecological networks

(2017) Shai Pilosof et al.   Nature Ecology & Evolution

Linear filtering reveals false negatives in species interaction data

(2017) Michiel Stock et al.   Scientific Reports

Characterizing Species Interactions to Understand Press Perturbations: What Is the Community Matrix?

(2016) Mark Novak et al.   Annual Review of Ecology Evolution and Systematics

Linking species functional roles to their network roles

(2016) Camille Coux et al.   ECOLOGY LETTERS

A common framework for identifying linkage rules across different types of interactions

(2016) Ignasi Bartomeus et al.   FUNCTIONAL ECOLOGY

Ecological networks in motion: micro- and macroscopic variability across scales

(2016) Kristian Trøjelsgaard et al.   FUNCTIONAL ECOLOGY

Describe, understand and predict: why do we need networks in ecology?

(2016) Timothée Poisot et al.   FUNCTIONAL ECOLOGY

Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems

(2016) Darren M. Evans et al.   FUNCTIONAL ECOLOGY

Sampling networks of ecological interactions

(2016) Pedro Jordano   FUNCTIONAL ECOLOGY

The interplay between population stability and food-web topology predicts the occurrence of motifs in complex food-webs

(2016) Angelo B. Monteiro et al.   JOURNAL OF THEORETICAL BIOLOGY

Network analyses support the role of prey preferences in shaping resource use patterns within five animal populations

(2016) Paula Lemos-Costa et al.   OIKOS

The meaning of functional trait composition of food webs for ecosystem functioning

(2016) Dominique Gravel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using food-web theory to conserve ecosystems

(2016) E. McDonald-Madden et al.   Nature Communications

Stability and complexity in model meta-ecosystems

(2016) Dominique Gravel et al.   Nature Communications

No complexity–stability relationship in empirical ecosystems

(2016) Claire Jacquet et al.   Nature Communications

Predicting plant attractiveness to pollinators with passive crowdsourcing

(2016) Christie A. Bahlai et al.   Royal Society Open Science

Proper evaluation of alignment-free network comparison methods

(2015) Ömer Nebil Yaveroğlu et al.   BIOINFORMATICS

mangal - making ecological network analysis simple

(2015) Timothée Poisot et al.   ECOGRAPHY

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

(2015) Timothée Poisot et al.   ECOGRAPHY

Characterizing topology of ecological networks along gradients: The limits of metrics’ standardization

(2015) Pierre-Luc Chagnon   Ecological Complexity

Trophic groups and modules: two levels of group detection in food webs

(2015) B. Gauzens et al.   Journal of the Royal Society Interface

Selection against instability: stable subgraphs are most frequent in empirical food webs

(2015) Jonathan J. Borrelli   OIKOS

Exploring the evolutionary signature of food webs' backbones using functional traits

(2015) Giulio V. Dalla Riva et al.   OIKOS

Pleistocene megafaunal interaction networks became more vulnerable after human arrival

(2015) Mathias M. Pires et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Geographical variation in mutualistic networks: similarity, turnover and partner fidelity

(2015) K. Trojelsgaard et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A theory for species co-occurrence in interaction networks

(2015) Kévin Cazelles et al.   Theoretical Ecology

The phylogenetic component of food web structure and intervality

(2015) Anna Eklöf et al.   Theoretical Ecology

BiMat: aMATLABpackage to facilitate the analysis of bipartite networks

(2015) Cesar O. Flores et al.   Methods in Ecology and Evolution

A new model for ecological networks using species-level traits

(2015) Catherine Crea et al.   Methods in Ecology and Evolution

The structure of probabilistic networks

(2015) Timothée Poisot et al.   Methods in Ecology and Evolution

Empirical Evaluation of Neutral Interactions in Host-Parasite Networks

(2014) E. F. Canard et al.   AMERICAN NATURALIST

Species’ roles in food webs show fidelity across a highly variable oak forest

(2014) Nick J. Baker et al.   ECOGRAPHY

Global biotic interactions: An open infrastructure to share and analyze species-interaction datasets

(2014) Jorrit H. Poelen et al.   Ecological Informatics

The rise of Network Ecology: Maps of the topic diversity and scientific collaboration

(2014) Stuart R. Borrett et al.   ECOLOGICAL MODELLING

Effects of trophic similarity on community composition

(2014) Hélène Morlon et al.   ECOLOGY LETTERS

A simple stochastic model for complex coextinctions in mutualistic networks: robustness decreases with connectance

(2014) Marcos Costa Vieira et al.   ECOLOGY LETTERS

Species traits and abundances predict metrics of plant-pollinator network structure, but not pairwise interactions

(2014) Colin Olito et al.   OIKOS

Spatial structure of an individual-based plant-pollinator network

(2014) Yoko L. Dupont et al.   OIKOS

Beyond species: why ecological interaction networks vary through space and time

(2014) Timothée Poisot et al.   OIKOS

Impact of Non-Native Terrestrial Mammals on the Structure of the Terrestrial Mammal Food Web of Newfoundland, Canada

(2014) Justin S. Strong et al.   PLoS One

Beta Diversity of Plant-Pollinator Networks and the Spatial Turnover of Pairwise Interactions

(2014) Daniel W. Carstensen et al.   PLoS One

Collapse of an ecological network in Ancient Egypt

(2014) Justin D. Yeakel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

When is an ecological network complex? Connectance drives degree distribution and emerging network properties

(2014) Timothée Poisot et al.   PeerJ

Effects of global environmental changes on parasitoid–host food webs and biological control

(2013) Jason M. Tylianakis et al.   BIOLOGICAL CONTROL

Historical climate-change influences modularity and nestedness of pollination networks

(2013) Bo Dalsgaard et al.   ECOGRAPHY

The dimensionality of ecological networks

(2013) Anna Eklöf et al.   ECOLOGY LETTERS

Trait-mediated indirect interactions in a marine intertidal system as quantified by functional responses

(2013) Mhairi E. Alexander et al.   OIKOS

Understanding Linkage Rules in Plant-Pollinator Networks by Using Hierarchical Models That Incorporate Pollinator Detectability and Plant Traits

(2013) Ignasi Bartomeus   PLoS One

The ghost of nestedness in ecological networks

(2013) Phillip P. A. Staniczenko et al.   Nature Communications

Inferring food web structure from predator-prey body size relationships

(2013) Dominique Gravel et al.   Methods in Ecology and Evolution

The dissimilarity of species interaction networks

(2012) Timothée Poisot et al.   ECOLOGY LETTERS

More than a meal… integrating non-feeding interactions into food webs

(2012) Sonia Kéfi et al.   ECOLOGY LETTERS

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Topological plasticity increases robustness of mutualistic networks

(2012) Rodrigo Ramos-Jiliberto et al.   JOURNAL OF ANIMAL ECOLOGY

Emergence of Structural Patterns in Neutral Trophic Networks

(2012) Elsa Canard et al.   PLoS One

Evolutionary Conservation of Species' Roles in Food Webs

(2012) D. B. Stouffer et al.   SCIENCE

Food webs: reconciling the structure and function of biodiversity

(2012) Ross M. Thompson et al.   TRENDS IN ECOLOGY & EVOLUTION

A functional approach reveals community responses to disturbances

(2012) David Mouillot et al.   TRENDS IN ECOLOGY & EVOLUTION

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Cheddar: analysis and visualisation of ecological communities in R

(2012) Lawrence N. Hudson et al.   Methods in Ecology and Evolution

Estimating trophic position in marine and estuarine food webs

(2012) W. Mather A. Carscallen et al.   Ecosphere

The evolutionary palaeoecology of species and the tragedy of the commons

(2011) P. D. Roopnarine et al.   Biology Letters

Using species co-occurrence networks to assess the impacts of climate change

(2011) Miguel B. Araújo et al.   ECOGRAPHY

The strength of plant–pollinator interactions

(2011) Diego P. Vázquez et al.   ECOLOGY

Trophic theory of island biogeography

(2011) Dominique Gravel et al.   ECOLOGY LETTERS

The ecological and evolutionary implications of merging different types of networks

(2011) Colin Fontaine et al.   ECOLOGY LETTERS

Geographic variation in network structure of a nearctic aquatic food web

(2011) Benjamin Baiser et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Modifying modifiers: what happens when interspecific interactions interact?

(2011) Antonio J. Golubski et al.   JOURNAL OF ANIMAL ECOLOGY

Evaluating sampling completeness in a desert plant-pollinator network

(2011) Natacha P. Chacoff et al.   JOURNAL OF ANIMAL ECOLOGY

Biology, Methodology or Chance? The Degree Distributions of Bipartite Ecological Networks

(2011) Richard J. Williams   PLoS One

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compartmentalization increases food-web persistence

(2011) Daniel B. Stouffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

General rules for managing and surveying networks of pests, diseases, and endangered species

(2011) I. Chades et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial Guilds in the Serengeti Food Web Revealed by a Bayesian Group Model

(2011) Edward B. Baskerville et al.   PLoS Computational Biology

From Graphs to Spatial Graphs

(2010) M.R.T. Dale et al.   Annual Review of Ecology Evolution and Systematics

A distance-based framework for measuring functional diversity from multiple traits

(2010) Etienne Laliberté et al.   ECOLOGY

Food webs: Ordering species according to body size yields high degree of intervality

(2010) Alexander E. Zook et al.   JOURNAL OF THEORETICAL BIOLOGY

A neutral-niche theory of nestedness in mutualistic networks

(2010) Abhay Krishna et al.   OIKOS

Scaling down from species to individuals: a flower-visitation network between individual honeybees and thistle plants

(2010) Y. L. Dupont et al.   OIKOS

Missing and forbidden links in mutualistic networks

(2010) J. M. Olesen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Network analysis shining light on parasite ecology and diversity

(2010) Robert Poulin   TRENDS IN PARASITOLOGY

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Major dimensions in food-web structure properties

(2009) Jan E. Vermaat et al.   ECOLOGY

Compartments in a marine food web associated with phylogeny, body mass, and habitat structure

(2009) Enrico L. Rezende et al.   ECOLOGY LETTERS

Understanding food-web persistence from local to global scales

(2009) Daniel B. Stouffer et al.   ECOLOGY LETTERS

Defining and measuring ecological specialization

(2009) Vincent Devictor et al.   JOURNAL OF APPLIED ECOLOGY

The architecture of mutualistic networks minimizes competition and increases biodiversity

(2009) Ugo Bastolla et al.   NATURE

Spatio-temporal variation in the structure of pollination networks

(2009) Yoko L. Dupont et al.   OIKOS

Bringing the Hutchinsonian niche into the 21st century: Ecological and evolutionary perspectives

(2009) R. D. Holt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?

(2009) Stefano Allesina et al.   PLoS Computational Biology

Trophically Unique Species Are Vulnerable to Cascading Extinction

(2008) Owen L. Petchey et al.   AMERICAN NATURALIST

Uncertainty in spatially explicit population models

(2008) E.S. Minor et al.   BIOLOGICAL CONSERVATION

USING NETWORK CENTRALITY MEASURES TO MANAGE LANDSCAPE CONNECTIVITY

(2008) Ernesto Estrada et al.   ECOLOGICAL APPLICATIONS

WHAT DO INTERACTION NETWORK METRICS TELL US ABOUT SPECIALIZATION AND BIOLOGICAL TRAITS

(2008) Nico Blüthgen et al.   ECOLOGY

NETWORK ANALYSIS REVEALS CONTRASTING EFFECTS OF INTRASPECIFIC COMPETITION ON INDIVIDUAL VS. POPULATION DIETS

(2008) Márcio S. Araújo et al.   ECOLOGY

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

The interaction between predation and competition

(2008) Peter Chesson et al.   NATURE

Food-web assembly during a classic biogeographic study: species’ "trophic breadth" corresponds to colonization order

(2008) Denise A. Piechnik et al.   OIKOS

A consumer's guide to nestedness analysis

(2008) Werner Ulrich et al.   OIKOS

A study of graph spectra for comparing graphs and trees

(2008) Richard C. Wilson et al.   PATTERN RECOGNITION

Size, foraging, and food web structure

(2008) O. L. Petchey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simple prediction of interaction strengths in complex food webs

(2008) E. L. Berlow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA