A Proteome-Wide Immunoinformatics Tool to Accelerate T-Cell Epitope Discovery and Vaccine Design in the Context of Emerging Infectious Diseases: An Ethnicity-Oriented Approach

Human leukocyte antigen susceptibility map for SARS-CoV-2

(2020) Austin Nguyen et al.   JOURNAL OF VIROLOGY

Health security capacities in the context of COVID-19 outbreak: an analysis of International Health Regulations annual report data from 182 countries

(2020) Nirmal Kandel et al.   LANCET

Evidence mounts on the disproportionate effect of COVID-19 on ethnic minorities

(2020) Tony Kirby   Lancet Respiratory Medicine

Better Epitope Discovery, Precision Immune Engineering, and Accelerated Vaccine Design Using Immunoinformatics Tools

(2020) Anne S. De Groot et al.   Frontiers in Immunology

Distribution of HLA allele frequencies in 82 Chinese individuals with coronavirus disease‐2019

(2020) Wei Wang et al.   HLA

Immunogenicity and safety of a recombinant adenovirus type-5-vectored COVID-19 vaccine in healthy adults aged 18 years or older: a randomised, double-blind, placebo-controlled, phase 2 trial

(2020) Feng-Cai Zhu et al.   LANCET

Safety and immunogenicity of the ChAdOx1 nCoV-19 vaccine against SARS-CoV-2: a preliminary report of a phase 1/2, single-blind, randomised controlled trial

(2020) Pedro M Folegatti et al.   LANCET

Bat-borne virus diversity, spillover and emergence

(2020) Michael Letko et al.   NATURE REVIEWS MICROBIOLOGY

An mRNA Vaccine against SARS-CoV-2 — Preliminary Report

(2020) Lisa A. Jackson et al.   NEW ENGLAND JOURNAL OF MEDICINE

A candidate multi-epitope vaccine against SARS-CoV-2

(2020) Tamalika Kar et al.   Scientific Reports

IPD-IMGT/HLA Database

(2019) James Robinson et al.   NUCLEIC ACIDS RESEARCH

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools

(2019) Faviel F Gonzalez-Galarza et al.   NUCLEIC ACIDS RESEARCH

Predicted MHC peptide binding promiscuity explains MHC class I ‘hotspots’ of antigen presentation defined by mass spectrometry eluted ligand data

(2018) Emma Christine Jappe et al.   IMMUNOLOGY

Recruitment of racial and ethnic minorities to clinical trials conducted within specialty clinics: an intervention mapping approach

(2018) Rossybelle P. Amorrortu et al.   Trials

RTS,S malaria vaccine efficacy and immunogenicity during Plasmodium falciparum challenge is associated with HLA genotype

(2018) C.M. Nielsen et al.   VACCINE

Funding vaccines for emerging infectious diseases

(2018) Gary Wong et al.   Human Vaccines & Immunotherapeutics

The Immune Epitope Database (IEDB): 2018 update

(2018) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

A Demographic Analysis of Racial/Ethnic Minority Enrollment Into HVTN Preventive Early Phase HIV Vaccine Clinical Trials Conducted in the United States, 2002-2016

(2018) Katherine Foy Huamani et al.   PUBLIC HEALTH REPORTS

Emerging Mosquito-Borne Threats and the Response from European and Eastern Mediterranean Countries

(2018) Nicholas Johnson et al.   International Journal of Environmental Research and Public Health

NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

(2017) Vanessa Jurtz et al.   JOURNAL OF IMMUNOLOGY

Arpeggio: A Web Server for Calculating and Visualising Interatomic Interactions in Protein Structures

(2017) Harry C Jubb et al.   JOURNAL OF MOLECULAR BIOLOGY

PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity

(2017) Geng Liu et al.   GigaScience

Identification of two unique naturally occurring Vpr sequence polymorphisms associated with clinical parameters in HIV-1 chronic infection

(2016) Doreen Kamori et al.   JOURNAL OF MEDICAL VIROLOGY

Novel Conserved-region T-cell Mosaic Vaccine With High Global HIV-1 Coverage Is Recognized by Protective Responses in Untreated Infection

(2016) Beatrice Ondondo et al.   MOLECULAR THERAPY

Determination of HLA-A, -C, -B, -DRB1 allele and haplotype frequency in Japanese population based on family study

(2015) N. Ikeda et al.   TISSUE ANTIGENS

A bioinformatics tool for epitope-based vaccine design that accounts for human ethnic diversity: Application to emerging infectious diseases

(2015) Patricio Oyarzun et al.   VACCINE

Recombinant and epitope-based vaccines on the road to the market and implications for vaccine design and production

(2015) Patricio Oyarzún et al.   Human Vaccines & Immunotherapeutics

Discordant Impact of HLA on Viral Replicative Capacity and Disease Progression in Pediatric and Adult HIV Infection

(2015) Emily Adland et al.   PLoS Pathogens

Proteome-wide analysis of HIV-specific naive and memory CD4+T cells in unexposed blood donors

(2014) Suzanne L. Campion et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

(2014) Faviel F. González-Galarza et al.   NUCLEIC ACIDS RESEARCH

The link between genetic variation and variability in vaccine responses: Systematic review and meta-analyses

(2014) Brunella Posteraro et al.   VACCINE

PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity

(2013) Patricio Oyarzún et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The T-Cell Response to HIV

(2013) B. Walker et al.   Cold Spring Harbor Perspectives in Medicine

Novel vaccine strategies against emerging viruses

(2013) Adolfo García-Sastre et al.   Current Opinion in Virology

T-cell epitope vaccine design by immunoinformatics

(2013) A. Patronov et al.   Open Biology

HIV-1 Vaccine-Induced T-Cell Reponses Cluster in Epitope Hotspots that Differ from Those Induced in Natural Infection with HIV-1

(2013) Tomer Hertz et al.   PLoS Pathogens

Immunodominance: A pivotal principle in host response to viral infections

(2012) Ali Akram et al.   CLINICAL IMMUNOLOGY

The genetic basis for interindividual immune response variation to measles vaccine: new understanding and new vaccine approaches

(2012) Iana H Haralambieva et al.   Expert Review of Vaccines

HIV and HLA Class I: An Evolving Relationship

(2012) Philip J.R. Goulder et al.   IMMUNITY

Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

(2012) J. M. Carlson et al.   JOURNAL OF VIROLOGY

HLA Class I-Mediated Control of HIV-1 in the Japanese Population, in Which the Protective HLA-B*57 and HLA-B*27 Alleles Are Absent

(2012) T. Naruto et al.   JOURNAL OF VIROLOGY

Prediction and prevention of the next pandemic zoonosis

(2012) Stephen S Morse et al.   LANCET

Promiscuous binding of extracellular peptides to cell surface class I MHC protein

(2012) H. N. Eisen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools

(2011) L. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

The role of the proteasome in the generation of MHC class I ligands and immune responses

(2011) E. J. A. M. Sijts et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Dana-Farber repository for machine learning in immunology

(2011) Guang Lan Zhang et al.   JOURNAL OF IMMUNOLOGICAL METHODS

HLA class II restriction of HIV-1 clade-specific neutralizing antibody responses in ethnic Thai recipients of the RV144 prime-boost vaccine combination of ALVAC-HIV and AIDSVAX® B/E

(2011) Robert Paris et al.   VACCINE

Human-Leukocyte Antigen Class I Cw 1502 and Class II DR 0301 Genotypes Are Associated with Resistance to Severe Acute Respiratory Syndrome (SARS) Infection

(2011) Sheng-Fan Wang et al.   VIRAL IMMUNOLOGY

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

(2009) Hao Zhang et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Association of human leukocyte antigen class II alleles with severe acute respiratory syndrome in the Vietnamese population

(2009) Naoto Keicho et al.   HUMAN IMMUNOLOGY

OptiTope--a web server for the selection of an optimal set of peptides for epitope-based vaccines

(2009) N. C. Toussaint et al.   NUCLEIC ACIDS RESEARCH

Evaluating Candidate Principal Surrogate Endpoints

(2008) Peter B. Gilbert et al.   BIOMETRICS

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites

(2008) Neil FW Saunders et al.   BMC BIOINFORMATICS

Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

(2008) Hong Lin et al.   BMC IMMUNOLOGY

HIV-1-Specific Cytotoxic T Lymphocyte (CTL) Responses Against Immunodominant Optimal Epitopes Slow the Progression of AIDS in China

(2008) Song Zhai et al.   CURRENT HIV RESEARCH