Plasmid-Borne and Chromosomal ESBL/AmpC Genes in Escherichia coli and Klebsiella pneumoniae in Global Food Products

Significant association between genes encoding virulence factors with antibiotic resistance and phylogenetic groups in community acquired uropathogenic Escherichia coli isolates

(2020) Zahra Yazdanpour et al.   BMC MICROBIOLOGY

Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder

(2020) Markus H K Johansson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

(2019) Rene S. Hendriksen et al.   Nature Communications

IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin

(2019) Adam Valcek et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Diversity of CTX-M-positive Escherichia coli recovered from animals in Canada

(2019) Ashley Cormier et al.   VETERINARY MICROBIOLOGY

Direct vertical transmission of ESBL/pAmpC-producing Escherichia coli limited in poultry production pyramid

(2019) Paula E. Oikarainen et al.   VETERINARY MICROBIOLOGY

Diversity in prevalence and characteristics of ESBL/pAmpC producing E. coli in food in Germany

(2019) Annemarie Kaesbohrer et al.   VETERINARY MICROBIOLOGY

Global trends in antimicrobial resistance in animals in low- and middle-income countries

(2019) Thomas P. Van Boeckel et al.   SCIENCE

Antimicrobial resistant E. coli and enterococci in pangasius fillets and prawns in Danish retail imported from Asia.

(2019) Johanne Ellis-Iversen et al.   FOOD CONTROL

Dissemination of carbapenemase-producing Enterobacteriaceae harbouring blaNDM or blaIMI in local market foods of Yangon, Myanmar

(2019) Yo Sugawara et al.   Scientific Reports

Whole genome sequence analysis of antimicrobial resistance genes, multilocus sequence types and plasmid sequences in ESBL/AmpC Escherichia coli isolated from broiler caecum and meat

(2019) M. Päivärinta et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Extended-spectrum β-lactamase-producing Escherichia coli in human-derived and foodchain-derived samples from England, Wales, and Scotland: an epidemiological surveillance and typing study

(2019) Michaela J Day et al.   LANCET INFECTIOUS DISEASES

In silico typing and comparative genomic analysis of IncFIIK plasmids: insights into the evolution of replicons, plasmid backbones and resistance determinant profiles

(2018) Dexi Bi et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Increased exposure to extended-spectrum β-lactamase-producing multidrug-resistant Enterobacteriaceae through the consumption of chicken and sushi products

(2018) Ana Isabel Vitas et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Surveillance of antimicrobial consumption in animal production sectors of low- and middle-income countries: Optimizing use and addressing antimicrobial resistance

(2018) Daniel Schar et al.   PLOS MEDICINE

Rapid and precise alignment of raw reads against redundant databases with KMA

(2018) Philip T. L. C. Clausen et al.   BMC BIOINFORMATICS

Characterization of Extended-Spectrum β-Lactamase-Producing Enterobacteriaceae From Retail Food in China

(2018) Qinghua Ye et al.   Frontiers in Microbiology

A Population-Based Surveillance Study of Shared Genotypes of Escherichia coli Isolates from Retail Meat and Suspected Cases of Urinary Tract Infections

(2018) Reina Yamaji et al.   mSphere

ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin

(2018) Louise Roer et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

The Resistance Phenotype and Molecular Epidemiology of Klebsiella pneumoniae in Bloodstream Infections in Shanghai, China, 2012–2015

(2017) Shu-zhen Xiao et al.   Frontiers in Microbiology

CTX-M-15-Producing E. coli Isolates from Food Products in Germany Are Mainly Associated with an IncF-Type Plasmid and Belong to Two Predominant Clonal E. coli Lineages

(2017) Alexandra Irrgang et al.   Frontiers in Microbiology

Prevalence and diversity of IncX plasmids carrying fluoroquinolone and β-lactam resistance genes inEscherichia colioriginating from diverse sources and geographical areas

(2016) Hana Dobiasova et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Antimicrobial Resistance of Escherichia coli, Enterococci, Pseudomonas aeruginosa, and Staphylococcus aureus from Raw Fish and Seafood Imported into Switzerland

(2016) RENATE BOSS et al.   JOURNAL OF FOOD PROTECTION

Distribution of virulence factors in ESBL-producing Escherichia coli isolated from the environment, livestock, food and humans

(2016) Andrea Müller et al.   SCIENCE OF THE TOTAL ENVIRONMENT

High Prevalence of ESBL-Producing Klebsiella pneumoniae Causing Community-Onset Infections in China

(2016) Jing Zhang et al.   Frontiers in Microbiology

Does the Recent Growth of Aquaculture Create Antibiotic Resistance Threats Different from those Associated with Land Animal Production in Agriculture?

(2015) Hansa Y. Done et al.   AAPS Journal

Extended-Spectrum-β-Lactamase-Producing Enterobacteriaceae Isolated from Vegetables Imported from the Dominican Republic, India, Thailand, and Vietnam

(2015) Katrin Zurfluh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dissemination of the multidrug-resistant extended-spectrum β-lactamase-producing Escherichia coli O25b-ST131 clone and the role of house crow (Corvus splendens) foraging on hospital waste in Bangladesh

(2015) B. Hasan et al.   CLINICAL MICROBIOLOGY AND INFECTION

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae

(2015) Amy J. Mathers et al.   CLINICAL MICROBIOLOGY REVIEWS

Prevalence and characterization of extended-spectrum-β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in ready-to-eat vegetables

(2015) Hong-Seok Kim et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Out-of-pocket health expenditures and antimicrobial resistance in low-income and middle-income countries: an economic analysis

(2015) Marcella Alsan et al.   LANCET INFECTIOUS DISEASES

Global trends in antimicrobial use in food animals

(2015) Thomas P. Van Boeckel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Klebsiella pneumoniae: Development of Carbapenem Resistance due to Acquisition of blaNDM-1 During Antimicrobial Therapy in Twin Infants with Pneumonia

(2015) Junying Zhu et al.   Frontiers in Microbiology

First detection of Klebsiella variicola producing OXA-181 carbapenemase in fresh vegetable imported from Asia to Switzerland

(2015) K. Zurfluh et al.   Antimicrobial Resistance and Infection Control

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Detection of qnr, aac(6′)-Ib-cr and qepA genes in Escherichia coli isolated from cooked meat products in Henan, China

(2014) Xiaobing Jiang et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Prevalence and genotypes of extended spectrum beta-lactamases in Enterobacteriaceae isolated from human stool and chicken meat in Hamburg, Germany

(2014) Cristina Belmar Campos et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Benchmarking of Methods for Genomic Taxonomy

(2014) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

IncI1 plasmids associated with the spread of CMY-2, CTX-M-1 and SHV-12 in Escherichia coli of animal and human origin

(2013) M. Accogli et al.   CLINICAL MICROBIOLOGY AND INFECTION

Plasmids and the spread of resistance

(2013) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Correlation between veterinary antimicrobial use and antimicrobial resistance in food-producing animals: a report on seven countries

(2013) I. Chantziaras et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

(2013) H. Hasman et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Extended-spectrum β-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: a global perspective

(2012) C. Ewers et al.   CLINICAL MICROBIOLOGY AND INFECTION

Dissemination of IncFIIK-type plasmids in multiresistant CTX-M-15-producing Enterobacteriaceae isolates from children in hospital paediatric oncology wards

(2012) Monika Dolejska et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

(2012) Timothy J. Johnson et al.   PLASMID

Occurrence of CTX-M Producing Escherichia coli in Soils, Cattle, and Farm Environment in France (Burgundy Region)

(2012) Alain Hartmann et al.   Frontiers in Microbiology

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains

(2011) M.A. Leverstein-van Hall et al.   CLINICAL MICROBIOLOGY AND INFECTION

Food Animals and Antimicrobials: Impacts on Human Health

(2011) B. M. Marshall et al.   CLINICAL MICROBIOLOGY REVIEWS

Prevalence of aac(6')-Ib-cr plasmid-mediated and chromosome-encoded fluoroquinolone resistance in Enterobacteriaceae in Italy

(2011) Ilaria Frasson et al.   Gut Pathogens

Resistance Plasmid Families in Enterobacteriaceae

(2009) A. Carattoli   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ESBL-producing E. coli in Austrian sewage sludge

(2009) Franz Ferdinand Reinthaler et al.   WATER RESEARCH

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

(2008) Françoise Jaureguy et al.   BMC GENOMICS

Prevalence and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae in Europe

(2008) R. Cantón et al.   CLINICAL MICROBIOLOGY AND INFECTION

Community-onset extended-spectrum β-lactamase (ESBL) producing Escherichia coli: Importance of international travel

(2008) Kevin B. Laupland et al.   JOURNAL OF INFECTION

Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern

(2008) Johann DD Pitout et al.   LANCET INFECTIOUS DISEASES