Pro-biomics: Omics Technologies To Unravel the Role of Probiotics in Health and Disease

Effects of Lactobacillus plantarum Q180 on Postprandial Lipid Levels and Intestinal Environment: A Double-Blind, Randomized, Placebo-Controlled, Parallel Trial

(2020) Ye Eun Park et al.   Nutrients

Effect of probiotic administration on gut microbiota and depressive behaviors in mice

(2020) Quan Feng Liu et al.   DARU-Journal of Pharmaceutical Sciences

Immune Responses Raised in an Experimental Colon Carcinoma Model Following Oral Administration of Lactobacillus casei

(2020) Georgios Aindelis et al.   Cancers

Lactobacillus fermentum CECT5716 Supplementation in Rats during Pregnancy and Lactation Impacts Maternal and Offspring Lipid Profile, Immune System and Microbiota

(2020) Ignasi Azagra-Boronat et al.   Cells

A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

(2020) Jinshui Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bifidobacterium pseudolongum reduces triglycerides by modulating gut microbiota in mice fed high-fat food

(2020) Ting-bei Bo et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Moving from probiotics to precision probiotics

(2020) Patrick Veiga et al.   Nature Microbiology

Assessment of the Immunomodulatory Properties of the Probiotic Strain Lactobacillus paracasei K5 In Vitro and In Vivo

(2020) Pelagia Chondrou et al.   Microorganisms

Bacteria pathogens drive host colonic epithelial cell promoter hypermethylation of tumor suppressor genes in colorectal cancer

(2020) Xiaoxuan Xia et al.   Microbiome

Towards a psychobiotic therapy for depression: Bifidobacterium breve CCFM1025 reverses chronic stress-induced depressive symptoms and gut microbial abnormalities in mice

(2020) Peijun Tian et al.   Neurobiology of Stress

Bridging Targeted and Untargeted Mass Spectrometry-Based Metabolomics via Hybrid Approaches

(2020) Li Chen et al.   Metabolites

In vivo screening of multiple bacterial strains identifies Lactobacillus rhamnosus Lb102 and Bifidobacterium animalis ssp. lactis Bf141 as probiotics that improve metabolic disorders in a mouse model of obesity

(2019) Mélanie Le Barz et al.   FASEB JOURNAL

Comparison of RNA-Seq and Microarray Gene Expression Platforms for the Toxicogenomic Evaluation of Liver From Short-Term Rat Toxicity Studies

(2019) Mohan S. Rao et al.   Frontiers in Genetics

Next generation probiotics in disease amelioration

(2019) Chih-Jung Chang et al.   JOURNAL OF FOOD AND DRUG ANALYSIS

The role of short-chain fatty acids in microbiota–gut–brain communication

(2019) Boushra Dalile et al.   Nature Reviews Gastroenterology & Hepatology

Three probiotic strains exert different effects on plasma bile acid profiles in healthy obese adults: randomised, double-blind placebo-controlled crossover study

(2019) T. Culpepper et al.   Beneficial Microbes

Bacillus amyloliquefaciens SC06 Protects Mice Against High-Fat Diet-Induced Obesity and Liver Injury via Regulating Host Metabolism and Gut Microbiota

(2019) Yang Wang et al.   Frontiers in Microbiology

The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response

(2019) Rebeca Martín et al.   Scientific Reports

Multidisciplinary and Comparative Investigations of Potential Psychobiotic Effects of Lactobacillus Strains Isolated From Newborns and Their Impact on Gut Microbiota and Ileal Transcriptome in a Healthy Murine Model

(2019) Bo Ram Beck et al.   Frontiers in Cellular and Infection Microbiology

Genomic Comparison of Lactobacillus helveticus Strains Highlights Probiotic Potential

(2019) Alessandra Fontana et al.   Frontiers in Microbiology

Effects of probiotics and prebiotics on intestinal microbiota in mice with acute colitis based on 16S rRNA gene sequencing

(2019) Ya-Nan Wang et al.   CHINESE MEDICAL JOURNAL

Role of Probiotics in Human Gut Microbiome-Associated Diseases

(2019) Seon-Kyun Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Beneficial roles of probiotics on the modulation of gut microbiota and immune response in pigs

(2019) Donghyun Shin et al.   PLoS One

Functional Effects of EPS-Producing Bifidobacterium Administration on Energy Metabolic Alterations of Diet-Induced Obese Mice

(2019) Nuria Salazar et al.   Frontiers in Microbiology

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms

(2019) Philipp Rausch et al.   Microbiome

Colorectal cancer-associated microbiota contributes to oncogenic epigenetic signatures

(2019) Iradj Sobhani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Health Benefits of Lactobacillus gasseri CP2305 Tablets in Young Adults Exposed to Chronic Stress: A Randomized, Double-Blind, Placebo-Controlled Study

(2019) Kensei Nishida et al.   Nutrients

Recent systems biology approaches for probiotics use in health aspects: a review

(2019) Monika Yadav et al.   3 Biotech

Reanalysis of Lactobacillus paracasei Lbs2 Strain and Large-Scale Comparative Genomics Places Many Strains into Their Correct Taxonomic Position

(2019) Samrat Ghosh et al.   Microorganisms

Bifidobacteria cell wall-derived exo-polysaccharides, lipoteichoic acids, peptidoglycans, polar lipids and proteins – their chemical structure and biological attributes

(2019) Marcelina Pyclik et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Immunomodulatory Effect of Lactobacillus casei in a Murine Model of Colon Carcinogenesis

(2019) Josefina Casas-Solís et al.   Probiotics and Antimicrobial Proteins

Pretreatment with probiotic Bifico ameliorates colitis-associated cancer in mice: Transcriptome and gut flora profiling

(2018) Huan Song et al.   CANCER SCIENCE

Systems biology of the human microbiome

(2018) Beatriz Peñalver Bernabé et al.   CURRENT OPINION IN BIOTECHNOLOGY

Probiotic treatment during neonatal age provides optimal protection against experimental asthma through the modulation of microbiota and T cells

(2018) Caroline Fraga Nunes et al.   INTERNATIONAL IMMUNOLOGY

Identification and in vitro assessment of potential probiotic characteristics and antibacterial effects of Lactobacillus plantarum subsp. plantarum SKI19, a bacteriocinogenic strain isolated from Thai fermented pork sausage

(2018) Viengvilaiphone Botthoulath et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Analysis of hepatic transcriptome demonstrates altered lipid metabolism following Lactobacillus johnsonii BS15 prevention in chickens with subclinical necrotic enteritis

(2018) Xiaodan Qing et al.   Lipids in Health and Disease

Modulation of the peripheral blood transcriptome by the ingestion of probiotic yoghurt and acidified milk in healthy, young men

(2018) Kathryn J. Burton et al.   PLoS One

Postbiotics: An evolving term within the functional foods field

(2018) J.E. Aguilar-Toalá et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Panomics for Precision Medicine

(2018) Charanjit Sandhu et al.   TRENDS IN MOLECULAR MEDICINE

Microbiota modification by probiotic supplementation reduces colitis associated colon cancer in mice

(2018) Maria Carolina S Mendes et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Delayed gut microbiota development in high-risk for asthma infants is temporarily modifiable by Lactobacillus supplementation

(2018) Juliana Durack et al.   Nature Communications

Lactobacillus plantarum Strain Ln4 Attenuates Diet-Induced Obesity, Insulin Resistance, and Changes in Hepatic mRNA Levels Associated with Glucose and Lipid Metabolism

(2018) Eunjung Lee et al.   Nutrients

Oral administration of Bifidobacterium bifidum TMC3115 to neonatal mice may alleviate IgE-mediated allergic risk in adulthood

(2018) R.Y. Cheng et al.   Beneficial Microbes

Modulation of Active Gut Microbiota by Lactobacillus rhamnosus GG in a Diet Induced Obesity Murine Model

(2018) Yosep Ji et al.   Frontiers in Microbiology

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade

(2018) Maria Kazou et al.   Frontiers in Microbiology

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

(2018) Jotham Suez et al.   CELL

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

(2018) Niv Zmora et al.   CELL

Systems biology primer: the basic methods and approaches

(2018) Iman Tavassoly et al.   Essays in Biochemistry

Mixture of Two Lactobacillus plantarum Strains Modulates the Gut Microbiota Structure and Regulatory T Cell Response in Diet-Induced Obese Mice

(2018) Jieun Lee et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Probiotic or synbiotic alters the gut microbiota and metabolism in a randomised controlled trial of weight management in overweight adults

(2018) A.A. Hibberd et al.   Beneficial Microbes

Multi-omics at single-cell resolution: comparison of experimental and data fusion approaches

(2018) Karolis Leonavicius et al.   CURRENT OPINION IN BIOTECHNOLOGY

Effects of heat, cold, acid and bile salt adaptations on the stress tolerance and protein expression of kefir-isolated probiotic Lactobacillus kefiranofaciens M1

(2017) Ming-Ju Chen et al.   FOOD MICROBIOLOGY

Probiotics in Inflammatory Bowel Disease

(2017) Bincy P. Abraham et al.   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

Lactobacillus plantarum LP-Onlly alters the gut flora and attenuates colitis by inducing microbiome alteration in interleukin-10 knockout mice

(2017) Hongqi Chen et al.   Molecular Medicine Reports

Chemically induced mouse models of acute and chronic intestinal inflammation

(2017) Stefan Wirtz et al.   Nature Protocols

Evidence of the Anti-Inflammatory Effects of Probiotics and Synbiotics in Intestinal Chronic Diseases

(2017) Julio Plaza-Díaz et al.   Nutrients

The anti-cholesterolaemic effect of a consortium of probiotics: An acute study in C57BL/6J mice

(2017) D. R. Michael et al.   Scientific Reports

Potentially probiotic Lactobacillus strains with anti-proliferative activity induce cytokine/chemokine production and neutrophil recruitment in mice

(2017) G. Saxami et al.   Beneficial Microbes

Emerging Trends in “Smart Probiotics”: Functional Consideration for the Development of Novel Health and Industrial Applications

(2017) Racha El Hage et al.   Frontiers in Microbiology

Assessing the Risk of Probiotic Dietary Supplements in the Context of Antibiotic Resistance

(2017) Min Zheng et al.   Frontiers in Microbiology

Next-generation probiotics: the spectrum from probiotics to live biotherapeutics

(2017) Paul W. O’Toole et al.   Nature Microbiology

A proliferative probiotic Bifidobacterium strain in the gut ameliorates progression of metabolic disorders via microbiota modulation and acetate elevation

(2017) Ryo Aoki et al.   Scientific Reports

Gene expression profile changes in the jejunum of weaned piglets after oral administration of Lactobacillus or an antibiotic

(2017) Dongyan Zhang et al.   Scientific Reports

Single-Cell (Multi)omics Technologies

(2016) Lia Chappell et al.   Annual Review of Genomics and Human Genetics

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Psychotropic effects of Lactobacillus plantarum PS128 in early life-stressed and naïve adult mice

(2016) Yen-Wenn Liu et al.   BRAIN RESEARCH

Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring

(2016) Shelly A. Buffington et al.   CELL

Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota

(2016) Jeanne Alard et al.   ENVIRONMENTAL MICROBIOLOGY

Tackling probiotic and gut microbiota functionality through proteomics

(2016) Lorena Ruiz et al.   Journal of Proteomics

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Association of host genome with intestinal microbial composition in a large healthy cohort

(2016) Williams Turpin et al.   NATURE GENETICS

Characterization of the Probiotic Yeast Saccharomyces boulardii in the Healthy Mucosal Immune System

(2016) Lauren E. Hudson et al.   PLoS One

Transcriptomic Profile of Whole Blood Cells from Elderly Subjects Fed Probiotic Bacteria Lactobacillus rhamnosus GG ATCC 53103 (LGG) in a Phase I Open Label Study

(2016) Gloria Solano-Aguilar et al.   PLoS One

Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health

(2016) Pamela Vernocchi et al.   Frontiers in Microbiology

Fusobacterium nucleatumin colorectal carcinoma tissue and patient prognosis

(2015) Kosuke Mima et al.   GUT

Probiotics modify human intestinal mucosa-associated microbiota in patients with colorectal cancer

(2015) ZHIGUANG GAO et al.   Molecular Medicine Reports

Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community

(2015) Hirosuke Sugahara et al.   Scientific Reports

Probiotic supplementation influences faecal short chain fatty acids in infants at high risk for eczema

(2015) H.K. Kim et al.   Beneficial Microbes

Geriatric Respondents and Non-Respondents to Probiotic Intervention Can be Differentiated by Inherent Gut Microbiome Composition

(2015) Suja Senan et al.   Frontiers in Microbiology

Understanding the role of gut microbiome in metabolic disease risk

(2014) Yolanda Sanz et al.   PEDIATRIC RESEARCH

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

A Systems Biology Approach Investigating the Effect of Probiotics on the Vaginal Microbiome and Host Responses in a Double Blind, Placebo-Controlled Clinical Trial of Post-Menopausal Women

(2014) Jordan E. Bisanz et al.   PLoS One

Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response

(2013) Francesca Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mild gut inflammation modulates the proteome of intestinalEscherichia coli

(2013) Sara Schumann et al.   ENVIRONMENTAL MICROBIOLOGY

Immunomodulatory effects of a probiotic drink containing Lactobacillus casei Shirota in healthy older volunteers

(2013) Honglin Dong et al.   EUROPEAN JOURNAL OF NUTRITION

Comparative Proteome Analysis of Bifidobacterium longum subsp. infantis Grown on β-Glucans from Different Sources and a Model for Their Utilization

(2013) Jinyang Zhao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Hepatic molecular responses to Bifidobacterium pseudocatenulatum CECT 7765 in a mouse model of diet-induced obesity

(2013) A. Moya-Pérez et al.   NUTRITION METABOLISM AND CARDIOVASCULAR DISEASES

Antibiotic resistance in probiotic bacteria

(2013) Miguel Gueimonde et al.   Frontiers in Microbiology

Impact of probiotic feeding during weaning on the serum lipid profile and plasma metabolome in infants

(2012) Elin Chorell et al.   BRITISH JOURNAL OF NUTRITION

Metagenomics and probiotics

(2012) M. Gueimonde et al.   CLINICAL MICROBIOLOGY AND INFECTION

Cholesterol-Lowering Probiotics as Potential Biotherapeutics for Metabolic Diseases

(2012) Manoj Kumar et al.   Experimental Diabetes Research

Selection of potential probiotic lactic acid bacteria from fermented olives by in vitro tests

(2012) Anthoula A. Argyri et al.   FOOD MICROBIOLOGY

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Screening for Antimicrobial Resistance Genes and Virulence Factors via Genome Sequencing

(2011) Mads Bennedsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Proteomics of the bacterial cross-talk by quorum sensing

(2010) Raffaella Di Cagno et al.   Journal of Proteomics

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways

(2010) P. van Baarlen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome Analysis ofLactobacillus rhamnosusGG Using 2-D DIGE and Mass Spectrometry Shows Differential Protein Production in Laboratory and Industrial-Type Growth Media

(2009) Kerttu Koskenniemi et al.   JOURNAL OF PROTEOME RESEARCH

Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo

(2008) Freddy J Troost et al.   BMC GENOMICS

Resistance of potential probiotic lactic acid bacteria and bifidobacteria of African and European origin to antimicrobials: Determination and transferability of the resistance genes to other bacteria

(2007) Labia Irene Ivette Ouoba et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Analysis of Host-Inducing Proteome Changes inBifidobacterium longumNCC2705 Grown in Vivo

(2007) Jing Yuan et al.   JOURNAL OF PROTEOME RESEARCH