Transcriptome analysis reveals the long intergenic noncoding RNAs contributed to skeletal muscle differences between Yorkshire and Tibetan pig

Characterization and discrimination of Tibetan and Duroc × (Landrace × Yorkshire) pork using label-free quantitative proteomics analysis

(2019) Si Mi et al.   FOOD RESEARCH INTERNATIONAL

Dynamic Transcriptome Analysis Reveals Potential Long Non-coding RNAs Governing Postnatal Pineal Development in Pig

(2019) Yalan Yang et al.   Frontiers in Genetics

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

Toward understanding the origin and evolution of cellular organisms

(2019) Minoru Kanehisa   PROTEIN SCIENCE

Differential Transcriptome Analysis of Early Postnatal Developing Longissimus Dorsi Muscle from Two Pig Breeds Characterized in Divergent Myofiber Traits and Fatness

(2018) Xiaoxing Xu et al.   ANIMAL BIOTECHNOLOGY

Comparative transcriptomic analysis of skeletal muscle tissue during prenatal stages in Tongcheng and Yorkshire pig using RNA-seq

(2018) Huijing Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

WNK1 regulates skeletal muscle cell hypertrophy by modulating the nuclear localization and transcriptional activity of FOXO4

(2018) Shintaro Mandai et al.   Scientific Reports

Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs

(2018) Cheng Zou et al.   Frontiers in Genetics

A whole-genome sequence based association study on pork eating quality traits and cooking loss in a specially designed heterogeneous F6 pig population

(2018) Jiuxiu Ji et al.   MEAT SCIENCE

A comparison of prenatal muscle transcriptome and proteome profiles between pigs with divergent growth phenotypes

(2018) Peng Shang et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain

(2017) Siling Liu et al.   GENOME RESEARCH

Transcriptome Analysis Reveals Long Intergenic Noncoding RNAs Contributed to Growth and Meat Quality Differences between Yorkshire and Wannanhua Pig

(2017) Cheng Zou et al.   Genes

iTRAQ-based proteomic analysis reveals key proteins affecting muscle growth and lipid deposition in pigs

(2017) Zhixiu Wang et al.   Scientific Reports

Long noncoding RNA (lincRNA), a new paradigm in gene expression control

(2016) Emre Deniz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

(2016) Hugo Varet et al.   PLoS One

Identification and functional analysis of long intergenic noncoding RNA genes in porcine pre-implantation embryonic development

(2016) Jingyu Li et al.   Scientific Reports

Molecular cloning, structural analysis, and tissue expression of the TNNT3 gene in Guizhou black goat

(2015) Haolin Chen et al.   GENE

Increased prenatal IGF2 expression due to the porcine IGF2 intron3-G3072A mutation may be responsible for increased muscle mass1

(2015) D. L. Clark et al.   JOURNAL OF ANIMAL SCIENCE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1

(2015) Liang Zhou et al.   Nature Communications

The Mitochondrial Calcium Uniporter Controls Skeletal Muscle Trophism In Vivo

(2015) Cristina Mammucari et al.   Cell Reports

Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species

(2015) Hadas Hezroni et al.   Cell Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

Phospholipase D regulates the size of skeletal muscle cells through the activation of mTOR signaling

(2013) Rami Jaafar et al.   Cell Communication and Signaling

Mechanisms regulating skeletal muscle growth and atrophy

(2013) Stefano Schiaffino et al.   FEBS Journal

cAMP signaling in skeletal muscle adaptation: hypertrophy, metabolism, and regeneration

(2012) Rebecca Berdeaux et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

A PGC-1α Isoform Induced by Resistance Training Regulates Skeletal Muscle Hypertrophy

(2012) Jorge L. Ruas et al.   CELL

mTOR Signaling in Growth Control and Disease

(2012) Mathieu Laplante et al.   CELL

Srf-Dependent Paracrine Signals Produced by Myofibers Control Satellite Cell-Mediated Skeletal Muscle Hypertrophy

(2012) Aline Guerci et al.   Cell Metabolism

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

An atlas of DNA methylomes in porcine adipose and muscle tissues

(2012) Mingzhou Li et al.   Nature Communications

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Phospholipase D Regulates Myogenic Differentiation through the Activation of Both mTORC1 and mTORC2 Complexes

(2011) Rami Jaafar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Wnt7a–Fzd7 signalling directly activates the Akt/mTOR anabolic growth pathway in skeletal muscle

(2011) Julia von Maltzahn et al.   NATURE CELL BIOLOGY

G i2 Signaling Promotes Skeletal Muscle Hypertrophy, Myoblast Differentiation, and Muscle Regeneration

(2011) G. C. Minetti et al.   Science Signaling

Regulation of PI3-kinase/Akt signaling by muscle-enriched microRNA-486

(2010) E. M. Small et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

MOR23 Promotes Muscle Regeneration and Regulates Cell Adhesion and Migration

(2009) Christine A. Griffin et al.   DEVELOPMENTAL CELL

Regulation of mTORC1 and mTORC2 Complex Assembly by Phosphatidic Acid: Competition with Rapamycin

(2008) A. Toschi et al.   MOLECULAR AND CELLULAR BIOLOGY