Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae)
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae)
Authors
Keywords
-
Journal
Scientific Reports
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-02-05
DOI
10.1038/s41598-021-82692-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Organelle inheritance and genome architecture variation in isogamous brown algae
- (2020) Ji Won Choi et al. Scientific Reports
- Insights Into Oxidized Lipid Modification in Barley Roots as an Adaptation Mechanism to Salinity Stress
- (2020) Dingyi Yu et al. Frontiers in Plant Science
- Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences
- (2020) Deng-Feng Xie et al. ANNALS OF BOTANY
- Implications of plastome evolution in the true lilies (monocot order Liliales)
- (2020) Hoang Dang Khoa Do et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
- (2019) Stephan Greiner et al. NUCLEIC ACIDS RESEARCH
- Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome
- (2019) Deng-Feng Xie et al. Frontiers in Plant Science
- Historical Biogeography of Melanthiaceae: A Case of Out-of-North America Through the Bering Land Bridge
- (2019) Changkyun Kim et al. Frontiers in Plant Science
- Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses
- (2019) YuMeng Huo et al. Scientific Reports
- Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
- (2018) Wan-Lin Dong et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Paleoallium billgenseli gen. et sp. nov.: Fossil Monocot Remains from the Latest Early Eocene Republic Flora, Northeastern Washington State, USA
- (2018) Kathleen B. Pigg et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Reconstructing the phylogenetic history of the tribe Leucocoryneae (Allioideae): Reticulate evolution and diversification in South America
- (2018) Agostina B. Sassone et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development
- (2018) Xin Wang et al. Horticulture Research
- Spontaneous hybridization among Allium tulipifolium and A. robustum (Allium subg. Melanocrommyum, Amaryllidaceae) under cultivation
- (2017) SERGEI SMIRNOV et al. Phytotaxa
- Inferring the evolutionary mechanism of the chloroplast genome size by comparing whole-chloroplast genome sequences in seed plants
- (2017) Zheng Xiao-Ming et al. Scientific Reports
- Phylogenetic relations in tribe Leucocoryneae (Amaryllidaceae, Allioideae) and the validation ofZoellneralliumbased on DNA sequences and cytomolecular data
- (2016) Gustavo Souza et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica
- (2016) Thomas J. Givnish et al. CLADISTICS
- A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales
- (2016) Michael R. McKain et al. Genome Biology and Evolution
- Orchid historical biogeography, diversification, Antarctica and the paradox of orchid dispersal
- (2016) Thomas J. Givnish et al. JOURNAL OF BIOGEOGRAPHY
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- Molecular phylogeny, divergence time estimates and historical biogeography within one of the world's largest monocot genera
- (2016) Qin-Qin Li et al. AoB Plants
- Intercontinental long-distance dispersal of Canellaceae from the New to the Old World revealed by a nuclear single copy gene and chloroplast loci
- (2015) Sebastian Müller et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography
- (2015) Yan Yu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Developing single nucleotide polymorphism markers for the identification of pineapple (Ananas comosus) germplasm
- (2015) Lin Zhou et al. Horticulture Research
- Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes
- (2013) Shichao Chen et al. PLoS One
- Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae
- (2012) P. Roxanne Steele et al. AMERICAN JOURNAL OF BOTANY
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)
- (2012) Ze-Long Nie et al. BMC EVOLUTIONARY BIOLOGY
- A dated phylogeny of the papaya family (Caricaceae) reveals the crop’s closest relatives and the family’s biogeographic history
- (2012) Fernanda Antunes Carvalho et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- Does the Mode of Plastid Inheritance Influence Plastid Genome Architecture?
- (2012) Kate Crosby et al. PLoS One
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China
- (2010) Q.-Q. Li et al. ANNALS OF BOTANY
- Out of Africa: north-westwards Pleistocene expansions of the heather Erica arborea
- (2010) Aurélie Désamoré et al. JOURNAL OF BIOGEOGRAPHY
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Unparalleled GC content in the plastid DNA of Selaginella
- (2009) David Roy Smith PLANT MOLECULAR BIOLOGY
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
- A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the western North American center of diversity
- (2008) Nhu H. Nguyen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)
- (2008) Johan A. A. Nylander et al. SYSTEMATIC BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started