The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development

STAYGREEN, STAY HEALTHY: a loss-of-susceptibility mutation in the STAYGREEN gene provides durable, broad-spectrum disease resistances for over 50 years of US cucumber production

(2018) Yuhui Wang et al.   NEW PHYTOLOGIST

STAYGREEN (CsSGR) is a candidate for the anthracnose (Colletotrichum orbiculare) resistance locus cla in Gy14 cucumber

(2018) Junsong Pan et al.   THEORETICAL AND APPLIED GENETICS

Who is sowing our seeds? A systematic review of the use of plant genetic resources in research

(2017) L. R. Davies et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genetic Analysis and QTL Mapping of Resistance to Gummy Stem Blight in Cucumis sativus Seedling Stage

(2017) Shulin Liu et al.   PLANT DISEASE

GenoCore: A simple and fast algorithm for core subset selection from large genotype datasets

(2017) Seongmun Jeong et al.   PLoS One

QTL mapping of domestication and diversifying selection related traits in round-fruited semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis)

(2017) Yupeng Pan et al.   THEORETICAL AND APPLIED GENETICS

QTL mapping of downy and powdery mildew resistances in PI 197088 cucumber with genotyping-by-sequencing in RIL population

(2017) Yuhui Wang et al.   THEORETICAL AND APPLIED GENETICS

QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628)

(2016) Yuhui Wang et al.   THEORETICAL AND APPLIED GENETICS

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genetic diversity in Indian cucumber based on microsatellite and morphological markers

(2013) Sudhakar Pandey et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy inCucumis

(2013) Luming Yang et al.   PLANT JOURNAL

Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly

(2012) Luming Yang et al.   PLANT JOURNAL

Genetic Diversity and Population Structure of Cucumber (Cucumis sativus L.)

(2012) Jing Lv et al.   PLoS One

Occidental diffusion of cucumber (Cucumis sativus) 500–1300 CE: two routes to Europe

(2011) Harry S. Paris et al.   ANNALS OF BOTANY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

(2011) Miao-Xin Li et al.   HUMAN GENETICS

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia

(2010) P. Sebastian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS