Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution

The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)

(2017) Wenbin Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular phylogeny of the genus Bolusiella (Orchidaceae, Angraecinae)

(2017) Simon Verlynde et al.   PLANT SYSTEMATICS AND EVOLUTION

One-third of the plastid genes evolved under positive selection in PACMAD grasses

(2017) Anthony Piot et al.   PLANTA

The complete chloroplast genome of Pleione bulbocodioides (Orchidaceae)

(2017) Youcai Shi et al.   Conservation Genetics Resources

Phylogenetic analysis of Andinia (Pleurothallidinae; Orchidaceae) and a systematic re-circumscription of the genus

(2017) MARK WILSON et al.   Phytotaxa

The Complete Plastome Sequences of Four Orchid Species: Insights into the Evolution of the Orchidaceae and the Utility of Plastomic Mutational Hotspots

(2017) Zhitao Niu et al.   Frontiers in Plant Science

Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes

(2017) Chao Xu et al.   Frontiers in Plant Science

Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response

(2017) Zdravka Ivanova et al.   Frontiers in Plant Science

Clarified relationship between Dactylorhiza viridis and Dactylorhiza iberica renders obsolete the former genus Coeloglossum (Orchidaceae: Orchidinae)

(2017) Richard M. Bateman et al.   KEW BULLETIN

Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny

(2017) Xiang-Qin Yu et al.   PLoS One

Chloroplast Genomic Resource of Paris for Species Discrimination

(2017) Yun Song et al.   Scientific Reports

Chloroplast genome structures in Gentiana (Gentianaceae), based on three medicinal alpine plants used in Tibetan herbal medicine

(2016) Lianghong Ni et al.   CURRENT GENETICS

The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion

(2016) Lianghong Ni et al.   GENE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Higher substitution rates and lower dN/dS for the plastid genes in Gnetales than other gymnosperms

(2015) Bo Wang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats

(2015) Shiliang Hu et al.   BMC GENOMICS

The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication

(2015) Delene J. Oldenburg et al.   CURRENT GENETICS

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Orchid phylogenomics and multiple drivers of their extraordinary diversification

(2015) Thomas J. Givnish et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dendrobium SSR markers play a good role in genetic diversity and phylogenetic analysis of Orchidaceae species

(2015) JieYu Kang et al.   SCIENTIA HORTICULTURAE

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

(2015) Choun-Sea Lin et al.   Scientific Reports

Complete Chloroplast Genome of the Wollemi Pine (Wollemia nobilis): Structure and Evolution

(2015) Jia-Yee S. Yap et al.   PLoS One

Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae)

(2014) Joseph F. Walker et al.   AMERICAN JOURNAL OF BOTANY

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

(2014) Hui Huang et al.   BMC EVOLUTIONARY BIOLOGY

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

(2014) Brad R Ruhfel et al.   BMC EVOLUTIONARY BIOLOGY

A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs

(2014) Wenpan Dong et al.   BMC GENETICS

Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species

(2014) Ying Zhang et al.   GENE

Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution

(2014) Wenhu Guo et al.   Genome Biology and Evolution

Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants

(2014) Peter Civáň et al.   Genome Biology and Evolution

Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications

(2014) Jing Luo et al.   PLoS One

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

(2013) Jun-Bo Yang et al.   BMC EVOLUTIONARY BIOLOGY

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane

(2013) S. Kikuchi et al.   SCIENCE

Plastome sequences of two New World bamboos-Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)-extend phylogenomic understanding of Bambusoideae

(2012) Sean V. Burke et al.   AMERICAN JOURNAL OF BOTANY

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

(2012) Craig F. Barrett et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis

(2011) Maria D. Logacheva et al.   Genome Biology and Evolution

Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes

(2011) E. Delannoy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

(2010) Fu-Hui Wu et al.   BMC PLANT BIOLOGY

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results

(2010) Marcin Górniak et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences

(2009) Cássio van den Berg et al.   ANNALS OF BOTANY

The Complete Nucleotide Sequences of the 5 Genetically Distinct Plastid Genomes of Oenothera, Subsection Oenothera: II. A Microevolutionary View Using Bioinformatics and Formal Genetic Data

(2008) S. Greiner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cloning and expression of a plastid-encoded subunit, beta-carboxyltransferase gene (accD) and a nuclear-encoded subunit, biotin carboxylase of acetyl-CoA carboxylase from oil palm (Elaeis guineensis Jacq.)

(2008) Alisa Nakkaew et al.   PLANT SCIENCE