Digitalizing heterologous gene expression in Gram‐negative bacteria with a portable ON/OFF module

Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida

(2019) Daniel C. Volke et al.   Microbial Biotechnology

Defensive Function of Transposable Elements in Bacteria

(2019) Catherine Fan et al.   ACS Synthetic Biology

SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology

(2018) James Alastair McLaughlin et al.   ACS Synthetic Biology

Jungle Express is a versatile repressor system for tight transcriptional control

(2018) Thomas L. Ruegg et al.   Nature Communications

Recognizing and engineering digital-like logic gates and switches in gene regulatory networks

(2016) Robert W Bradley et al.   CURRENT OPINION IN MICROBIOLOGY

Overloaded and stressed: whole-cell considerations for bacterial synthetic biology

(2016) Olivier Borkowski et al.   CURRENT OPINION IN MICROBIOLOGY

Synthetic biology: insights into biological computation

(2016) Romilde Manzoni et al.   Integrative Biology

Foundations and Emerging Paradigms for Computing in Living Cells

(2016) Kevin C. Ma et al.   JOURNAL OF MOLECULAR BIOLOGY

Genetic circuit design automation

(2016) A. A. K. Nielsen et al.   SCIENCE

Sharing Structure and Function in Biological Design with SBOL 2.0

(2016) Nicholas Roehner et al.   ACS Synthetic Biology

Quantitative bacterial transcriptomics with RNA-seq

(2015) James P Creecy et al.   CURRENT OPINION IN MICROBIOLOGY

Stress-response balance drives the evolution of a network module and its host genome

(2015) C. Gonzalez et al.   Molecular Systems Biology

SBOL Visual: A Graphical Language for Genetic Designs

(2015) Jacqueline Y. Quinn et al.   PLOS BIOLOGY

Quorum-Sensing Crosstalk-Driven Synthetic Circuits: From Unimodality to Trimodality

(2014) Fuqing Wu et al.   CHEMISTRY & BIOLOGY

Principles of genetic circuit design

(2014) Jennifer A N Brophy et al.   NATURE METHODS

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities

(2014) Esteban Martínez-García et al.   NUCLEIC ACIDS RESEARCH

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A comparative analysis of the properties of regulated promoter systems commonly used for recombinant gene expression in Escherichia coli

(2013) Simone Balzer et al.   Microbial Cell Factories

Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

(2013) Dokyun Na et al.   NATURE BIOTECHNOLOGY

Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli

(2013) Seung Min Yoo et al.   Nature Protocols

Promoter engineering: Recent advances in controlling transcription at the most fundamental level

(2012) John Blazeck et al.   Biotechnology Journal

A translation-coupling DNA cassette for monitoring protein translation in Escherichia coli

(2012) Daniel Mendez-Perez et al.   METABOLIC ENGINEERING

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

New insights into small RNA-dependent translational regulation in prokaryotes

(2012) Guillaume Desnoyers et al.   TRENDS IN GENETICS

Bistability and Oscillations in Gene Regulation Mediated by Small Noncoding RNAs

(2011) Dengyu Liu et al.   PLoS One

A Simple Negative Interaction in the Positive Transcriptional Feedback of a Single Gene Is Sufficient to Produce Reliable Oscillations

(2011) Jesús M. Miró-Bueno et al.   PLoS One

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

(2011) Y. Hao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology

(2011) Baojun Wang et al.   Nature Communications

Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications

(2010) Kinga Umenhoffer et al.   Microbial Cell Factories

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Understanding gene circuits at cell-fate branch points for rational cell reprogramming

(2010) Joseph X. Zhou et al.   TRENDS IN GENETICS

Designing and engineering evolutionary robust genetic circuits

(2010) Sean C Sleight et al.   Journal of Biological Engineering

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Emergent bistability by a growth-modulating positive feedback circuit

(2009) Cheemeng Tan et al.   Nature Chemical Biology

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Synthetic Gene Networks That Count

(2009) A. E. Friedland et al.   SCIENCE

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Positively regulated bacterial expression systems

(2008) Trygve Brautaset et al.   Microbial Biotechnology