Deciphering bacterial mechanisms of root colonization

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

(2020) Elisa Korenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of Plant Fraction, Soil, and Plant Species on Microbiota: a Multikingdom Comparison

(2020) Andrzej Tkacz et al.   mBio

Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota

(2020) Zhiqiang Cheng et al.   Microorganisms

Optimizing Rhizobium-legume symbioses by simultaneous measurement of rhizobial competitiveness and N2 fixation in nodules

(2020) Marcela A. Mendoza-Suárez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A decade of advances in transposon-insertion sequencing

(2020) Amy K. Cain et al.   NATURE REVIEWS GENETICS

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Lifestyle adaptations ofRhizobiumfrom rhizosphere to symbiosis

(2020) Rachel M. Wheatley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Evolution and Ecology of Bacterial Warfare

(2019) Elisa T. Granato et al.   CURRENT BIOLOGY

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beneficial microbes going underground of root immunity

(2019) Ke Yu et al.   PLANT CELL AND ENVIRONMENT

Genome engineering of Clostridium difficile using the CRISPR-Cas9 system

(2018) S. Wang et al.   CLINICAL MICROBIOLOGY AND INFECTION

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Versatile use of Azospirillum brasilense strains tagged with egfp and mCherry genes for the visualization of biofilms associated with wheat roots

(2018) Alberto Ramirez-Mata et al.   MICROBIOLOGICAL RESEARCH

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Mutant phenotypes for thousands of bacterial genes of unknown function

(2018) Morgan N. Price et al.   NATURE

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Plant health: feedback effect of root exudates-rhizobiome interactions

(2018) Oluwaseyi Samuel Olanrewaju et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Chromatic Bacteria – A Broad Host-Range Plasmid and Chromosomal Insertion Toolbox for Fluorescent Protein Expression in Bacteria

(2018) Rudolf O. Schlechter et al.   Frontiers in Microbiology

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Bacterial Biosensors for in Vivo Spatiotemporal Mapping of Root Secretion

(2017) Francesco Pini et al.   PLANT PHYSIOLOGY

Live imaging of root–bacteria interactions in a microfluidics setup

(2017) Hassan Massalha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Genome-wide identification of bacterial plant colonization genes

(2017) Benjamin J. Cole et al.   PLOS BIOLOGY

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

(2017) Hongwei Liu et al.   Scientific Reports

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Systemic enrichment of antifungal traits in the rhizosphere microbiome after pathogen attack

(2016) Jan-Hendrik Dudenhöffer et al.   JOURNAL OF ECOLOGY

A rhamnose-deficient lipopolysaccharide mutant ofRhizobiumsp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hostsSesbania cannabinaand wetland rice

(2016) Shubhajit Mitra et al.   JOURNAL OF EXPERIMENTAL BOTANY

In Azospirillum brasilense , mutations in flmA or flmB genes affect polar flagellum assembly, surface polysaccharides, and attachment to maize roots

(2016) Fernando Ariel Rossi et al.   MICROBIOLOGICAL RESEARCH

Role of Fimbriae, Flagella and Cellulose on the Attachment of Salmonella Typhimurium ATCC 14028 to Plant Cell Wall Models

(2016) Michelle S. F. Tan et al.   PLoS One

Bacillus subtilis Early Colonization of Arabidopsis thaliana Roots Involves Multiple Chemotaxis Receptors

(2016) Rosalie Allard-Massicotte et al.   mBio

Transitioning from Microbiome Composition to Microbial Community Interactions: The Potential of the Metaorganism Hydra as an Experimental Model

(2016) Peter Deines et al.   Frontiers in Microbiology

Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome

(2016) Rafael Soares Correa de Souza et al.   Scientific Reports

Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity

(2015) Barbara Reinhold-Hurek et al.   Annual Review of Phytopathology

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Chemotaxis Control of Transient Cell Aggregation

(2015) Gladys Alexandre   JOURNAL OF BACTERIOLOGY

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Stable Fluorescent and Enzymatic Tagging ofBradyrhizobium diazoefficiensto Analyze Host-Plant Infection and Colonization

(2015) Raphael Ledermann et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

(2015) Kelly M. Wetmore et al.   mBio

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Rapid quantification of rice root-associated bacteria by flow cytometry

(2014) G. Valdameri et al.   LETTERS IN APPLIED MICROBIOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

van der Waals forces influencing adhesion of cells

(2014) K. Kendall et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Syntrophic exchange in synthetic microbial communities

(2014) M. T. Mee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Attachment of Agrobacterium to plant surfaces

(2014) Ann G. Matthysse   Frontiers in Plant Science

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Construction of a marker system for the evaluation of competitiveness for legume nodulation in Rhizobium strains

(2013) Carmen Sánchez-Cañizares et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Linking Plant Nutritional Status to Plant-Microbe Interactions

(2013) Lilia C. Carvalhais et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of reciprocal adhesion genes in pathogenic and non-pathogenicPseudomonas

(2012) Estrella Duque et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic comparison of the endophyte Herbaspirillum seropedicaeSmR1 and the phytopathogen Herbaspirillum rubrisubalbicansM1 by suppressive subtractive hybridization and partial genome sequencing

(2012) Rose A. Monteiro et al.   FEMS MICROBIOLOGY ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Phosphorus limitation increases attachment in Agrobacterium tumefaciens and reveals a conditional functional redundancy in adhesin biosynthesis

(2012) Jing Xu et al.   RESEARCH IN MICROBIOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

Genetic tools for tagging Gram-negative bacteria with mCherry for visualization in vitro and in natural habitats, biofilm and pathogenicity studies

(2010) Ellen L. Lagendijk et al.   FEMS MICROBIOLOGY LETTERS

LapF, the second largest Pseudomonas putida protein, contributes to plant root colonization and determines biofilm architecture

(2010) Marta Martínez-Gil et al.   MOLECULAR MICROBIOLOGY

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Monitoring of root growth and redox conditions in paddy soil rhizotrons by redox electrodes and image analysis

(2010) Hannes Schmidt et al.   PLANT AND SOIL

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Mechanisms and regulation of polar surface attachment in Agrobacterium tumefaciens

(2009) Amelia D Tomlinson et al.   CURRENT OPINION IN MICROBIOLOGY

Characterization of starvation-induced dispersion inPseudomonas putidabiofilms: genetic elements and molecular mechanisms

(2009) Morten Gjermansen et al.   MOLECULAR MICROBIOLOGY

Transposon Tn5

(2008) William S. Reznikoff   Annual Review of Genetics

A Single Mutation in the oprF mRNA Leader Confers Strict Translational Control by the Gac/Rsm System in Pseudomonas fluorescens CHA0

(2008) María Cecilia Alvarez Crespo et al.   CURRENT MICROBIOLOGY

The rhizobial adhesion protein RapA1 is involved in adsorption of rhizobia to plant roots but not in nodulation

(2008) Elías J. Mongiardini et al.   FEMS MICROBIOLOGY ECOLOGY

Different, overlapping mechanisms for colonization of abiotic and plant surfaces byPseudomonas putida

(2008) Fátima Yousef-Coronado et al.   FEMS MICROBIOLOGY LETTERS

Glucomannan-Mediated Attachment of Rhizobium leguminosarum to Pea Root Hairs Is Required for Competitive Nodule Infection

(2008) A. Williams et al.   JOURNAL OF BACTERIOLOGY