Population structure in a continuously distributed coastal marine species, the harbor porpoise, based on microhaplotypes derived from poor‐quality samples
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Title
Population structure in a continuously distributed coastal marine species, the harbor porpoise, based on microhaplotypes derived from poor‐quality samples
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2021-02-08
DOI
10.1111/mec.15827
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Note: Only part of the references are listed.- Confidently identifying the correct K value using the Δ K method: When does K = 2?
- (2020) Catherine I. Cullingham et al. MOLECULAR ECOLOGY
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- (2020) Yacine Ben Chehida et al. Scientific Reports
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- OUP accepted manuscript
- (2018) BIOINFORMATICS
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- (2018) NH Nielsen et al. MARINE ECOLOGY PROGRESS SERIES
- Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations
- (2018) Brenna R. Forester et al. MOLECULAR ECOLOGY
- The search for loci under selection: trends, biases and progress
- (2018) Collin W. Ahrens et al. MOLECULAR ECOLOGY
- Evaluation of redundancy analysis to identify signatures of local adaptation
- (2018) Thibaut Capblancq et al. Molecular Ecology Resources
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- Upwelling jet separation in the California Current System
- (2018) Renato M. Castelao et al. Scientific Reports
- The Sex Life of Harbor Porpoises (Phocoena phocoena): Lateralized and Aerial Behavior
- (2018) William Keener et al. AQUATIC MAMMALS
- Coastal Upwelling Revisited: Ekman, Bakun, and Improved Upwelling Indices for the U.S. West Coast
- (2018) Michael G. Jacox et al. JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
- Microhaplotypes provide increased power from short-read DNA sequences for relationship inference
- (2017) Diana S. Baetscher et al. Molecular Ecology Resources
- Demerelate : calculating interindividual relatedness for kinship analysis based on codominant diploid genetic markers using R
- (2017) Philipp Kraemer et al. Molecular Ecology Resources
- A comparison of individual-based genetic distance metrics for landscape genetics
- (2017) A. J. Shirk et al. Molecular Ecology Resources
- A multi-scale high-resolution analysis of global sea surface temperature
- (2017) Toshio Michael Chin et al. REMOTE SENSING OF ENVIRONMENT
- Nowhere to go: noise impact assessments for marine mammal populations with high site fidelity
- (2017) KA Forney et al. Endangered Species Research
- Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling
- (2017) Michaël C. Fontaine et al. Royal Society Open Science
- Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies
- (2016) Cynthia Riginos et al. Current Zoology
- A decade of seascape genetics: contributions to basic and applied marine connectivity
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- Controlling false discoveries in genome scans for selection
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- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
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- (2016) Pierpaolo Maisano Delser et al. Scientific Reports
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- (2016) Cynthia Riginos et al. Current Zoology
- A decade of seascape genetics: contributions to basic and applied marine connectivity
- (2016) KA Selkoe et al. MARINE ECOLOGY PROGRESS SERIES
- Alongcoast structure and interannual variability of seasonal midshelf water properties and velocity in the Northern California Current System
- (2016) B. Hickey et al. JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
- Spatially Explicit Analysis of Genome-Wide SNPs Detects Subtle Population Structure in a Mobile Marine Mammal, the Harbor Porpoise
- (2016) Ljerka Lah et al. PLoS One
- Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt
- (2015) John R. Candy et al. Molecular Ecology Resources
- Clumpak : a program for identifying clustering modes and packaging population structure inferences across K
- (2015) Naama M. Kopelman et al. Molecular Ecology Resources
- Convergent evolution of the genomes of marine mammals
- (2015) Andrew D Foote et al. NATURE GENETICS
- LEA: AnRpackage for landscape and ecological association studies
- (2015) Eric Frichot et al. Methods in Ecology and Evolution
- popart: full-feature software for haplotype network construction
- (2015) Jessica W. Leigh et al. Methods in Ecology and Evolution
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Postglacial climate changes and rise of three ecotypes of harbour porpoises,Phocoena phocoena, in western Palearctic waters
- (2014) Michaël C. Fontaine et al. MOLECULAR ECOLOGY
- Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing
- (2014) Nathan R. Campbell et al. Molecular Ecology Resources
- Population structure and intergeneric hybridization in harbour porpoises Phocoena phocoena in British Columbia, Canada
- (2014) CA Crossman et al. Endangered Species Research
- Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
- (2013) Brittany L. Hancock-Hanser et al. Molecular Ecology Resources
- A simulation-based evaluation of methods for inferring linear barriers to gene flow
- (2012) CHRISTOPHER BLAIR et al. Molecular Ecology Resources
- Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
- (2012) Eva-Maria Willing et al. PLoS One
- History of expansion and anthropogenic collapse in a top marine predator of the Black Sea estimated from genetic data
- (2012) M. C. Fontaine et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Marine mammal bycatch in gillnet and other entangling net fisheries, 1990 to 2011
- (2012) RR Reeves et al. Endangered Species Research
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis
- (2011) Ruslan Kalendar et al. GENOMICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems
- (2011) Andrew M. Moore et al. PROGRESS IN OCEANOGRAPHY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
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- Satellite-derived variability in chlorophyll, wind stress, sea surface height, and temperature in the northern California Current System
- (2008) Roberto M. Venegas et al. JOURNAL OF GEOPHYSICAL RESEARCH
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